miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAGATTGAATAGTT

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TGAGGTAGTAGATTGAATAGTT CTATACAATCTACTGTCTTTCC up 2 0


Secondary structure

GTCCCAAGCTGTCCTTGAGGCTGAGGTAGTAGATTGAATAGTTGTGGAGTCCTATCCTCCCTTTGAGCTAACTATACAATCTACTGTCTTTCCTAAGGAGACAGTCAGATC
--------------------CTGAGGTAGTAGATTGAATAGTT 	44
--------------------CTGAGGTAGTAGATTGAATAGT 	28
---------------------TGAGGTAGTAGATTGAATAG 	1
---------------------TGAGGTAGTAGATTGAATAGTTG 	2
---------------------TGAGGTAGTAGATTGAATAGT 	26
---------------------TGAGGTAGTAGATTGAATAGTT 	506
----------------------GAGGTAGTAGATTGAATAGTT 	1
----------------------GAGGTAGTAGATTGAATAGTTG 	2

Overlaps with: MNEST025878
Overlaps with miRBase pre-miRNAs: gga-let-7k
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TGAGGTAGTAGATTGAATAGTT CTATACAATCTACTGTCTTTCC up 2 0


Secondary structure

GTCCCAAGCTGTCCTTGAGGCTGAGGTAGTAGATTGAATAGTTGTGGAGTCCTATCCTCCCTTTGAGCTAACTATACAATCTACTGTCTTTCCTAAGGAGACAGTCAGATC
--------------------CTGAGGTAGTAGATTGAATAGTT 	29
--------------------CTGAGGTAGTAGATTGAATAG 	1
--------------------CTGAGGTAGTAGATTGAATAGT 	20
---------------------TGAGGTAGTAGATTGAATAG 	8
---------------------TGAGGTAGTAGATTGAATAGT 	56
---------------------TGAGGTAGTAGATTGAATAGTT 	602
---------------------TGAGGTAGTAGATTGAATAGTTG 	1
-----------------------AGGTAGTAGATTGAATAGTT 	1
-----------------------------------------------------------------------CTATACAATCTACTGTCTTTC 	1
-----------------------------------------------------------------------CTATACAATCTACTGTCTTT 	1

Overlaps with: MNEST025878
Overlaps with miRBase pre-miRNAs: gga-let-7k
HuntMi prediction: true miRNA