miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAGGTAGTAGATTGTATAGTT

selected species: Sus scrofa



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TGAGGTAGTAGATTGTATAGTT CTATACAATCTATTGCCTTCCC up 1 0


Secondary structure

GAAGAGATTGCTCTATCAGAGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGAGGAGTAGACTTGCTG
--------------------GTGAGGTAGTAGATTGTATAGTT 	2
--------------------GTGAGGTAGTAGATTGTATAGT 	1
---------------------TGAGGTAGTAGATTGTATAGTTGT 	87
---------------------TGAGGTAGTAGATTGTATAGTTG 	2299
---------------------TGAGGTAGTAGATTGTATAG 	30968
---------------------TGAGGTAGTAGATTGTATAGTT 	273173
---------------------TGAGGTAGTAGATTGTATAGT 	126968
---------------------TGAGGTAGTAGATTGTATA 	1530
---------------------TGAGGTAGTAGATTGTATAGTTGTG 	1
----------------------GAGGTAGTAGATTGTATAGTT 	1265
----------------------GAGGTAGTAGATTGTATAGTTG 	21
----------------------GAGGTAGTAGATTGTATAGT 	552
----------------------GAGGTAGTAGATTGTATAG 	157
-----------------------AGGTAGTAGATTGTATAGTTG 	1
-----------------------AGGTAGTAGATTGTATAGTT 	7
-----------------------AGGTAGTAGATTGTATAGTTGT 	7
-----------------------AGGTAGTAGATTGTATAGT 	6
------------------------GGTAGTAGATTGTATAGTT 	420
------------------------GGTAGTAGATTGTATAGTTG 	2
--------------------------TAGTAGATTGTATAGTTGTG 	2


Overlaps with: MNEST027323 MNEST027636 MNEST028346 MNEST030738 MNEST033115
Overlaps with miRBase pre-miRNAs: cgr-let-7f ssc-let-7f-2 hsa-let-7f-1 ptr-let-7f-1 mdo-let-7f-1 mml-let-7f-1 bta-let-7f-1 cfa-let-7f ppy-let-7f-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636844 TGAGGTAGTAGATTGTATAGTT CTATACAGTCTACTGTCTTTCC up 1 0


Secondary structure

GAACACTAGTGCTCTGTGGGATGAGGTAGTAGATTGTATAGTTTTAGGGTCATACCCCATCTTGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTAGTACACTTCCC
--ACACTAGTGCTCTGTGGGA 	2
-----------------GGGATGAGGTAGTAGATTGTATAGT 	1
--------------------ATGAGGTAGTAGATTGTATAGTTT 	1
--------------------ATGAGGTAGTAGATTGTATAGT 	3
--------------------ATGAGGTAGTAGATTGTATAGTT 	5
--------------------ATGAGGTAGTAGATTGTATAG 	2
---------------------TGAGGTAGTAGATTGTATAGTTT 	19277
---------------------TGAGGTAGTAGATTGTATAG 	30968
---------------------TGAGGTAGTAGATTGTATAGTT 	273173
---------------------TGAGGTAGTAGATTGTATAGT 	126968
---------------------TGAGGTAGTAGATTGTATA 	1530
---------------------TGAGGTAGTAGATTGTATAGTTTT 	444
---------------------TGAGGTAGTAGATTGTATAGTTTTA 	2
----------------------GAGGTAGTAGATTGTATAGTT 	1265
----------------------GAGGTAGTAGATTGTATAGTTT 	105
----------------------GAGGTAGTAGATTGTATAGT 	552
----------------------GAGGTAGTAGATTGTATAG 	157
-----------------------AGGTAGTAGATTGTATAGTT 	7
-----------------------AGGTAGTAGATTGTATAGTTT 	2
-----------------------AGGTAGTAGATTGTATAGT 	6
------------------------GGTAGTAGATTGTATAGTTT 	18
------------------------GGTAGTAGATTGTATAGTT 	420
-------------------------GTAGTAGATTGTATAGTTT 	4


Overlaps with: MNEST027637 MNEST028347 MNEST030739 MNEST031760 MNEST032646 MNEST033116 MNEST033902
Overlaps with miRBase pre-miRNAs: rno-let-7f-2 mml-let-7f-2 ppy-let-7f-2 hsa-let-7f-2 mmu-let-7f-2 ssc-let-7f-1 ptr-let-7f-2 bta-let-7f-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636847 TGAGGTAGTAGATTGTATAGTT CTATACAATCTATTGCCTTCCC up 1 0


Secondary structure

GAAGAGATTGCTCTATCAGAGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGAGGAGTAGACTTGCTG
-AAGAGATTGCTCTATCAGAG 	1
--------------------GTGAGGTAGTAGATTGTATAGTT 	1
---------------------TGAGGTAGTAGATTGTATAGTTGT 	125
---------------------TGAGGTAGTAGATTGTATAG 	27683
---------------------TGAGGTAGTAGATTGTATAGTT 	280661
---------------------TGAGGTAGTAGATTGTATA 	1094
---------------------TGAGGTAGTAGATTGTATAGTTGTGG 	3
---------------------TGAGGTAGTAGATTGTATAGTTG 	2579
---------------------TGAGGTAGTAGATTGTATAGT 	122092
----------------------GAGGTAGTAGATTGTATAGTTG 	16
----------------------GAGGTAGTAGATTGTATAGTT 	1375
----------------------GAGGTAGTAGATTGTATAGT 	591
----------------------GAGGTAGTAGATTGTATAG 	161
-----------------------AGGTAGTAGATTGTATAGTT 	13
-----------------------AGGTAGTAGATTGTATAGTTG 	3
-----------------------AGGTAGTAGATTGTATAGTTGT 	4
-----------------------AGGTAGTAGATTGTATAGT 	4
------------------------GGTAGTAGATTGTATAGTT 	272
--------------------------TAGTAGATTGTATAGTTGTGG 	1


Overlaps with: MNEST027323 MNEST027636 MNEST028346 MNEST030738 MNEST033115
Overlaps with miRBase pre-miRNAs: cgr-let-7f ssc-let-7f-2 hsa-let-7f-1 ptr-let-7f-1 mdo-let-7f-1 mml-let-7f-1 bta-let-7f-1 cfa-let-7f ppy-let-7f-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636847 TGAGGTAGTAGATTGTATAGTT CTATACAGTCTACTGTCTTTCC up 1 0


Secondary structure

GAACACTAGTGCTCTGTGGGATGAGGTAGTAGATTGTATAGTTTTAGGGTCATACCCCATCTTGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTAGTACACTTCCC
--ACACTAGTGCTCTGTGGGA 	1
-----------------GGGATGAGGTAGTAGATTGTATAG 	1
------------------GGATGAGGTAGTAGATTGTATAGTT 	1
--------------------ATGAGGTAGTAGATTGTATAGTTT 	2
--------------------ATGAGGTAGTAGATTGTATAGTT 	11
--------------------ATGAGGTAGTAGATTGTATAGT 	6
---------------------TGAGGTAGTAGATTGTATAGTTT 	20452
---------------------TGAGGTAGTAGATTGTATAG 	27683
---------------------TGAGGTAGTAGATTGTATAGTT 	280661
---------------------TGAGGTAGTAGATTGTATA 	1094
---------------------TGAGGTAGTAGATTGTATAGTTTTA 	2
---------------------TGAGGTAGTAGATTGTATAGTTTT 	523
---------------------TGAGGTAGTAGATTGTATAGT 	122092
----------------------GAGGTAGTAGATTGTATAGTT 	1375
----------------------GAGGTAGTAGATTGTATAGT 	591
----------------------GAGGTAGTAGATTGTATAGTTTT 	4
----------------------GAGGTAGTAGATTGTATAG 	161
----------------------GAGGTAGTAGATTGTATAGTTT 	108
-----------------------AGGTAGTAGATTGTATAGTT 	13
-----------------------AGGTAGTAGATTGTATAGT 	4
------------------------GGTAGTAGATTGTATAGTT 	272
------------------------GGTAGTAGATTGTATAGTTT 	18
-------------------------GTAGTAGATTGTATAGTTT 	1
-------------------------------------------TTAGGGTCATACCCCATCTTGG 	1
-----------------------------------------------------------------------CTATACAGTCTACTGTCTTTC 	1
-----------------------------------------------------------------------CTATACAGTCTACTGTCTTT 	2


Overlaps with: MNEST027637 MNEST028347 MNEST030739 MNEST031760 MNEST032646 MNEST033116 MNEST033902
Overlaps with miRBase pre-miRNAs: rno-let-7f-2 mml-let-7f-2 ppy-let-7f-2 hsa-let-7f-2 mmu-let-7f-2 ssc-let-7f-1 ptr-let-7f-2 bta-let-7f-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636849 TGAGGTAGTAGATTGTATAGTT CTATACAATCTATTGCCTTCCC up 1 0


Secondary structure

GAAGAGATTGCTCTATCAGAGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGAGGAGTAGACTTGCTG
-AAGAGATTGCTCTATCAGAG 	1
--------------------GTGAGGTAGTAGATTGTATAGTT 	1
--------------------GTGAGGTAGTAGATTGTATAG 	1
---------------------TGAGGTAGTAGATTGTATAGTTGT 	76
---------------------TGAGGTAGTAGATTGTATAG 	14403
---------------------TGAGGTAGTAGATTGTATAGTTG 	1345
---------------------TGAGGTAGTAGATTGTATAGTT 	156737
---------------------TGAGGTAGTAGATTGTATAGT 	45102
---------------------TGAGGTAGTAGATTGTATA 	816
----------------------GAGGTAGTAGATTGTATAGTTGT 	1
----------------------GAGGTAGTAGATTGTATAG 	81
----------------------GAGGTAGTAGATTGTATAGTTG 	8
----------------------GAGGTAGTAGATTGTATAGTT 	676
----------------------GAGGTAGTAGATTGTATAGT 	204
-----------------------AGGTAGTAGATTGTATAGTT 	8
-----------------------AGGTAGTAGATTGTATAGTTGT 	10
-----------------------AGGTAGTAGATTGTATAGTTG 	8
-----------------------AGGTAGTAGATTGTATAGT 	4
------------------------GGTAGTAGATTGTATAGTT 	129
---------------------------------------------------------------------------AACTATACAATCTATTGCCTTC 	1
---------------------------------------------------------------------------AACTATACAATCTATTGCCT 	1


Overlaps with: MNEST027323 MNEST027636 MNEST028346 MNEST030738 MNEST033115
Overlaps with miRBase pre-miRNAs: cgr-let-7f ssc-let-7f-2 hsa-let-7f-1 ptr-let-7f-1 mdo-let-7f-1 mml-let-7f-1 bta-let-7f-1 cfa-let-7f ppy-let-7f-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Sus scrofa GSM636849 TGAGGTAGTAGATTGTATAGTT CTATACAGTCTACTGTCTTTCC up 1 0


Secondary structure

GAACACTAGTGCTCTGTGGGATGAGGTAGTAGATTGTATAGTTTTAGGGTCATACCCCATCTTGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTAGTACACTTCCC
--------------------ATGAGGTAGTAGATTGTATAGTT 	11
--------------------ATGAGGTAGTAGATTGTATAGT 	2
---------------------TGAGGTAGTAGATTGTATAGTTTT 	34
---------------------TGAGGTAGTAGATTGTATAG 	14403
---------------------TGAGGTAGTAGATTGTATAGTTT 	3206
---------------------TGAGGTAGTAGATTGTATAGTT 	156737
---------------------TGAGGTAGTAGATTGTATAGT 	45102
---------------------TGAGGTAGTAGATTGTATA 	816
----------------------GAGGTAGTAGATTGTATAG 	81
----------------------GAGGTAGTAGATTGTATAGTTT 	16
----------------------GAGGTAGTAGATTGTATAGTT 	676
----------------------GAGGTAGTAGATTGTATAGT 	204
-----------------------AGGTAGTAGATTGTATAGTT 	8
-----------------------AGGTAGTAGATTGTATAGT 	4
------------------------GGTAGTAGATTGTATAGTT 	129
------------------------GGTAGTAGATTGTATAGTTT 	2
-----------------------------------------------------------------------CTATACAGTCTACTGTCTTTC 	3


Overlaps with: MNEST027637 MNEST028347 MNEST030739 MNEST031760 MNEST032646 MNEST033116 MNEST033902
Overlaps with miRBase pre-miRNAs: rno-let-7f-2 mml-let-7f-2 ppy-let-7f-2 hsa-let-7f-2 mmu-let-7f-2 ssc-let-7f-1 ptr-let-7f-2 bta-let-7f-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Sus scrofa GSM636848 TGAGGTAGTAGATTGTATAGTT CTATACAATCTATTGCCTTCCC up 1 0


Secondary structure

GAAGAGATTGCTCTATCAGAGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGAGGAGTAGACTTGCTG
--------------------GTGAGGTAGTAGATTGTATAG 	1
--------------------GTGAGGTAGTAGATTGTATAGT 	2
--------------------GTGAGGTAGTAGATTGTATAGTT 	1
---------------------TGAGGTAGTAGATTGTATAG 	13118
---------------------TGAGGTAGTAGATTGTATAGT 	70049
---------------------TGAGGTAGTAGATTGTATAGTT 	284549
---------------------TGAGGTAGTAGATTGTATAGTTGTG 	1
---------------------TGAGGTAGTAGATTGTATAGTTGT 	44
---------------------TGAGGTAGTAGATTGTATAGTTG 	2297
---------------------TGAGGTAGTAGATTGTATA 	764
---------------------TGAGGTAGTAGATTGTATAGTTGTGG 	2
----------------------GAGGTAGTAGATTGTATAGTT 	2230
----------------------GAGGTAGTAGATTGTATAGTTGTG 	1
----------------------GAGGTAGTAGATTGTATAGTTG 	29
----------------------GAGGTAGTAGATTGTATAGT 	553
----------------------GAGGTAGTAGATTGTATAGTTGT 	1
----------------------GAGGTAGTAGATTGTATAG 	118
-----------------------AGGTAGTAGATTGTATAGTTG 	3
-----------------------AGGTAGTAGATTGTATAGTT 	24
-----------------------AGGTAGTAGATTGTATAGTTGT 	12
-----------------------AGGTAGTAGATTGTATAGT 	3
------------------------GGTAGTAGATTGTATAGTT 	569
------------------------GGTAGTAGATTGTATAGTTG 	1
--------------------------TAGTAGATTGTATAGTTGTGG 	3
---------------------------------------------------------------------------AACTATACAATCTATTGCCTT 	1
-----------------------------------------------------------------------------CTATACAATCTATTGCCTTC 	1


Overlaps with: MNEST027323 MNEST027636 MNEST028346 MNEST030738 MNEST033115
Overlaps with miRBase pre-miRNAs: cgr-let-7f ssc-let-7f-2 hsa-let-7f-1 ptr-let-7f-1 mdo-let-7f-1 mml-let-7f-1 bta-let-7f-1 cfa-let-7f ppy-let-7f-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Sus scrofa GSM636848 TGAGGTAGTAGATTGTATAGTT CTATACAGTCTACTGTCTTTCC up 1 0


Secondary structure

GAACACTAGTGCTCTGTGGGATGAGGTAGTAGATTGTATAGTTTTAGGGTCATACCCCATCTTGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTAGTACACTTCCC
--ACACTAGTGCTCTGTGGGA 	7
--------------------ATGAGGTAGTAGATTGTATAGT 	7
--------------------ATGAGGTAGTAGATTGTATAGTT 	15
---------------------TGAGGTAGTAGATTGTATAG 	13118
---------------------TGAGGTAGTAGATTGTATAGT 	70049
---------------------TGAGGTAGTAGATTGTATAGTT 	284549
---------------------TGAGGTAGTAGATTGTATAGTTTT 	31
---------------------TGAGGTAGTAGATTGTATAGTTT 	3950
---------------------TGAGGTAGTAGATTGTATA 	764
----------------------GAGGTAGTAGATTGTATAGTTT 	47
----------------------GAGGTAGTAGATTGTATAGTT 	2230
----------------------GAGGTAGTAGATTGTATAGT 	553
----------------------GAGGTAGTAGATTGTATAG 	118
-----------------------AGGTAGTAGATTGTATAGTT 	24
-----------------------AGGTAGTAGATTGTATAGT 	3
------------------------GGTAGTAGATTGTATAGTT 	569
------------------------GGTAGTAGATTGTATAGTTT 	5
-------------------------GTAGTAGATTGTATAGTTT 	1
--------------------------TAGTAGATTGTATAGTTTTAGGGT 	1
-----------------------------------------------------------------------CTATACAGTCTACTGTCTTTC 	4
-----------------------------------------------------------------------CTATACAGTCTACTGTCTTT 	1


Overlaps with: MNEST027637 MNEST028347 MNEST030739 MNEST031760 MNEST032646 MNEST033116 MNEST033902
Overlaps with miRBase pre-miRNAs: rno-let-7f-2 mml-let-7f-2 ppy-let-7f-2 hsa-let-7f-2 mmu-let-7f-2 ssc-let-7f-1 ptr-let-7f-2 bta-let-7f-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Sus scrofa GSM636846 TGAGGTAGTAGATTGTATAGTT CTATACAATCTATTGCCTTCCC up 1 0


Secondary structure

GAAGAGATTGCTCTATCAGAGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGAGGAGTAGACTTGCTG
--------------------GTGAGGTAGTAGATTGTATAGTT 	2
---------------------TGAGGTAGTAGATTGTATAGTTGTGG 	1
---------------------TGAGGTAGTAGATTGTATAGTTGTG 	1
---------------------TGAGGTAGTAGATTGTATAGTTGT 	66
---------------------TGAGGTAGTAGATTGTATAG 	15063
---------------------TGAGGTAGTAGATTGTATAGTTG 	1514
---------------------TGAGGTAGTAGATTGTATAGTT 	155812
---------------------TGAGGTAGTAGATTGTATAGT 	44498
---------------------TGAGGTAGTAGATTGTATA 	700
----------------------GAGGTAGTAGATTGTATAG 	87
----------------------GAGGTAGTAGATTGTATAGTTG 	10
----------------------GAGGTAGTAGATTGTATAGTT 	878
----------------------GAGGTAGTAGATTGTATAGT 	211
-----------------------AGGTAGTAGATTGTATAGTT 	2
-----------------------AGGTAGTAGATTGTATAGTTGT 	21
-----------------------AGGTAGTAGATTGTATAGTTG 	4
-----------------------AGGTAGTAGATTGTATAGT 	5
------------------------GGTAGTAGATTGTATAGTT 	140
------------------------GGTAGTAGATTGTATAGTTG 	1


Overlaps with: MNEST027323 MNEST027636 MNEST028346 MNEST030738 MNEST033115
Overlaps with miRBase pre-miRNAs: cgr-let-7f ssc-let-7f-2 hsa-let-7f-1 ptr-let-7f-1 mdo-let-7f-1 mml-let-7f-1 bta-let-7f-1 cfa-let-7f ppy-let-7f-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Sus scrofa GSM636846 TGAGGTAGTAGATTGTATAGTT CTATACAGTCTACTGTCTTTCC up 1 0


Secondary structure

GAACACTAGTGCTCTGTGGGATGAGGTAGTAGATTGTATAGTTTTAGGGTCATACCCCATCTTGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTAGTACACTTCCC
--------------------ATGAGGTAGTAGATTGTATAGTT 	1
--------------------ATGAGGTAGTAGATTGTATAGT 	1
---------------------TGAGGTAGTAGATTGTATAGTTTT 	31
---------------------TGAGGTAGTAGATTGTATAG 	15063
---------------------TGAGGTAGTAGATTGTATAGTTT 	2809
---------------------TGAGGTAGTAGATTGTATAGTT 	155812
---------------------TGAGGTAGTAGATTGTATAGT 	44498
---------------------TGAGGTAGTAGATTGTATA 	700
----------------------GAGGTAGTAGATTGTATAG 	87
----------------------GAGGTAGTAGATTGTATAGTTTT 	1
----------------------GAGGTAGTAGATTGTATAGTTT 	22
----------------------GAGGTAGTAGATTGTATAGTT 	878
----------------------GAGGTAGTAGATTGTATAGT 	211
-----------------------AGGTAGTAGATTGTATAGTT 	2
-----------------------AGGTAGTAGATTGTATAGT 	5
------------------------GGTAGTAGATTGTATAGTT 	140
-------------------------GTAGTAGATTGTATAGTTT 	1
-----------------------------------------------------------------------CTATACAGTCTACTGTCTTTC 	6


Overlaps with: MNEST027637 MNEST028347 MNEST030739 MNEST031760 MNEST032646 MNEST033116 MNEST033902
Overlaps with miRBase pre-miRNAs: rno-let-7f-2 mml-let-7f-2 ppy-let-7f-2 hsa-let-7f-2 mmu-let-7f-2 ssc-let-7f-1 ptr-let-7f-2 bta-let-7f-2
HuntMi prediction: true miRNA