miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAGGTAGTAGGTTGTATAGTT

selected species: Caenorhabditis elegans



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	30
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	9
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	1

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGTT 	38
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGT 	16
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGTTT 	4
--------------------------------------------------GTGAGGTAGTAGGTTGTATAG 	1
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	6660
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	70609
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	6318
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	654
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	167
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTTG 	9
----------------------------------------------------GAGGTAGTAGGTTGTATAGTT 	44
----------------------------------------------------GAGGTAGTAGGTTGTATAGTTT 	8
----------------------------------------------------GAGGTAGTAGGTTGTATAGT 	6
-----------------------------------------------------AGGTAGTAGGTTGTATAGTT 	15
-----------------------------------------------------AGGTAGTAGGTTGTATAGTTTG 	3
-----------------------------------------------------AGGTAGTAGGTTGTATAGT 	2
------------------------------------------------------GGTAGTAGGTTGTATAGTT 	3

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM378784 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	52
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	1001
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	52
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	1
----------------------------------------------------GAGGTAGTAGGTTGTATAGTT 	3

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427346-5695 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	389
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	3392
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	429
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	93
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	13
-----------------------------------------------------AGGTAGTAGGTTGTATAGTT 	1

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427345-5693 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGT 	3
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	572
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	5773
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	778
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	181
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	24
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTTG 	1
----------------------------------------------------GAGGTAGTAGGTTGTATAGTT 	3
-----------------------------------------------------AGGTAGTAGGTTGTATAGTTTG 	2
-----------------------------------------------------AGGTAGTAGGTTGTATAGTT 	2
------------------------------------------------------GGTAGTAGGTTGTATAGTT 	1

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM427297-5679 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	5
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	64
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	22
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	3
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	2

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297751-9445 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
---------------------------------------------ATCCGGTGAGGTAGTAGGTTGTA 	1
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	16
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	7414
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	21
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	258
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	427
----------------------------------------------------GAGGTAGTAGGTTGTATAGTT 	8
----------------------------------------------------GAGGTAGTAGGTTGTATAG 	3
----------------------------------------------------GAGGTAGTAGGTTGTATAGTTT 	1
----------------------------------------------------GAGGTAGTAGGTTGTATAGT 	1
-----------------------------------------------------AGGTAGTAGGTTGTATAGTT 	22
------------------------------------------------------GGTAGTAGGTTGTATAGTT 	9
-------------------------------------------------------GTAGTAGGTTGTATAGTTT 	3
-------------------------------------------------------------------------TGGAATATTACCACCGGTGA 	1
-------------------------------------------------------------------------TGGAATATTACCACCGGTGAA 	1
----------------------------------------------------------------------------------------------CTATGCAATTTTCTACCTTACC 	5

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM297752-9446 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	7364
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	40
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	25
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	237
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	432
----------------------------------------------------GAGGTAGTAGGTTGTATAGTT 	7
-----------------------------------------------------AGGTAGTAGGTTGTATAGTT 	5
------------------------------------------------------GGTAGTAGGTTGTATAGTT 	17
-------------------------------------------------------GTAGTAGGTTGTATAGTTT 	8
----------------------------------------------------------------------------------------------CTATGCAATTTTCTACCTTAC 	3
----------------------------------------------------------------------------------------------CTATGCAATTTTCTACCTTACC 	6
-----------------------------------------------------------------------------------------------TATGCAATTTTCTACCTTACC 	2

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Caenorhabditis elegans GSM427301-5681 TGAGGTAGTAGGTTGTATAGTT CTATGCAATTTTCTACCTTACC up 1 0


Secondary structure

CATTTTTCAGGCAAGCAGGCGATTGGTGGACGGTCTACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAATTTTCTACCTTACCGGAGACAGAACTCTTCGAAGCTGCGTCGTCTTGCTCTCACAACTTTCT
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	19
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	91
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	10
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	9

Overlaps with: MNEST038263
Overlaps with miRBase pre-miRNAs: cel-let-7
HuntMi prediction: true miRNA