miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAGGTTGTATAGTT

selected species: Danio rerio



35 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATAGTT CTATACAACCTACTGTCTTTCT up 1 0


Secondary structure

GGTTACATGTTGACGGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACACTGGGAGATAACTATACAACCTACTGTCTTTCTCAAAGTCCAAATCAAGCT
---------------------TGAGGTAGTAGGTTGTATAGTTTT 	1
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	114
---------------------TGAGGTAGTAGGTTGTATAGT 	6
---------------------TGAGGTAGTAGGTTGTATAG 	2
---------------------TGAGGTAGTAGGTTGTATA 	2
------------------------GGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST034165
Overlaps with miRBase pre-miRNAs: dre-let-7a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATAGTT CTGTACAACCTCCTAGCTTTCC up 3 0


Secondary structure

CCTCCTCAGGGTGTCTGCGGTGCCCCCAGGCTGAGGTAGTAGGTTGTATAGTTTAGAATAACATCACTGGAGATAACTGTACAACCTCCTAGCTTTCCCTGAGATACACACGCTCCCGCCTCAACT
-------------------------------TGAGGTAGTAGGTTGTATAGTTT 	2
-------------------------------TGAGGTAGTAGGTTGTATAGTT 	114
-------------------------------TGAGGTAGTAGGTTGTATAGT 	6
-------------------------------TGAGGTAGTAGGTTGTATAG 	2
-------------------------------TGAGGTAGTAGGTTGTATA 	2
----------------------------------GGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST034166
Overlaps with miRBase pre-miRNAs: dre-let-7a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATAGTT AACTATACAGTCTATTGCCTTCCT up 1 2


Secondary structure

GTTTTTGGTGTCTGGACAAGGTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATCAAACCCTGTTCAGCTGATAACTATACAGTCTATTGCCTTCCTTGTGTCACCTAAGGTCTG
--------------------GTGAGGTAGTAGGTTGTATAGTT 	3
--------------------GTGAGGTAGTAGGTTGTATAG 	2
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	114
---------------------TGAGGTAGTAGGTTGTATAGT 	6
---------------------TGAGGTAGTAGGTTGTATAG 	2
---------------------TGAGGTAGTAGGTTGTATA 	2
------------------------GGTAGTAGGTTGTATAGTT 	1



Overlaps with miRBase pre-miRNAs: dre-let-7a-5
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

GTTTCCCACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTGACACCCTTCCTGTTAGATAACTATACAACTTACTGTCTTTCCTGAAGAGGCTGTAATATC
--------------------GTGAGGTAGTAGGTTGTATAGTT 	3
--------------------GTGAGGTAGTAGGTTGTATAG 	2
---------------------TGAGGTAGTAGGTTGTATAGTTTT 	1
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	114
---------------------TGAGGTAGTAGGTTGTATAGT 	6
---------------------TGAGGTAGTAGGTTGTATAG 	2
---------------------TGAGGTAGTAGGTTGTATA 	2
------------------------GGTAGTAGGTTGTATAGTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

AAGAGAGACTGTCGTTTGGGGTGAGGTAGTAGGTTGTATAGTTTGAGGGTTTAACCCTTGCTGTCAGATAACTATACAACTTACTGTCTTTCCCGAAGTGGCCGTAGTGTC
--------------------GTGAGGTAGTAGGTTGTATAGTT 	3
--------------------GTGAGGTAGTAGGTTGTATAG 	2
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	114
---------------------TGAGGTAGTAGGTTGTATAGT 	6
---------------------TGAGGTAGTAGGTTGTATAG 	2
---------------------TGAGGTAGTAGGTTGTATA 	2
------------------------GGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST034167
Overlaps with miRBase pre-miRNAs: dre-let-7a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATAGTT CTGTACAGCCTCCTAGCTTTCC up 3 0


Secondary structure

TATTAGAGCGATGTCTCGGGATGAGGTAGTAGGTTGTATAGTTTAGAGTTACAACACGGGAGATAACTGTACAGCCTCCTAGCTTTCCTCGAGCAGACGCCCTCCT
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	114
---------------------TGAGGTAGTAGGTTGTATAGT 	6
---------------------TGAGGTAGTAGGTTGTATAG 	2
---------------------TGAGGTAGTAGGTTGTATA 	2
------------------------GGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST034168
Overlaps with miRBase pre-miRNAs: dre-let-7a-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATAGTT CTATACAGTCTATTGCCTTCCC up 1 0


Secondary structure

CTGAGCTAGACATTGTTTTCCTCCACAGTGAACCTGTGTGTTTCTTCAAGGTGAGGTAGTAGGTTGTATAGTTTGTGGGAAGGATCACATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCCTGAGAGACACAATGACCACGAGTGAAAACAAATCATGAAAATAAAGAA
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGTT 	3
--------------------------------------------------GTGAGGTAGTAGGTTGTATAG 	2
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	114
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	6
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	2
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	2
------------------------------------------------------GGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST034170
Overlaps with miRBase pre-miRNAs: dre-let-7a-6
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATAGTT CTATACAACCTACTGTCTTTCT up 1 0


Secondary structure

GGTTACATGTTGACGGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACACTGGGAGATAACTATACAACCTACTGTCTTTCTCAAAGTCCAAATCAAGCT
---------------------TGAGGTAGTAGGTTGTATAGTTT 	80
---------------------TGAGGTAGTAGGTTGTATAGTT 	9485
---------------------TGAGGTAGTAGGTTGTATAGT 	216
---------------------TGAGGTAGTAGGTTGTATAG 	17
---------------------TGAGGTAGTAGGTTGTATA 	6
----------------------GAGGTAGTAGGTTGTATAGTT 	13
------------------------GGTAGTAGGTTGTATAGTT 	18
-------------------------------------------TTAGGGTCACACCCACACTGGGAG 	1
-------------------------------------------TTAGGGTCACACCCACACTGGGA 	1
-----------------------------------------------------------------------CTATACAACCTACTGTCTTTCT 	1
-----------------------------------------------------------------------CTATACAACCTACTGTCTTTC 	2


Overlaps with: MNEST034165
Overlaps with miRBase pre-miRNAs: dre-let-7a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATAGTT CTGTACAACCTCCTAGCTTTCC up 3 0


Secondary structure

CCTCCTCAGGGTGTCTGCGGTGCCCCCAGGCTGAGGTAGTAGGTTGTATAGTTTAGAATAACATCACTGGAGATAACTGTACAACCTCCTAGCTTTCCCTGAGATACACACGCTCCCGCCTCAACT
-----------------------------GCTGAGGTAGTAGGTTGTATAGT 	2
-----------------------------GCTGAGGTAGTAGGTTGTATA 	1
------------------------------CTGAGGTAGTAGGTTGTATAGTT 	4
------------------------------CTGAGGTAGTAGGTTGTATAGT 	4
-------------------------------TGAGGTAGTAGGTTGTATAGTTT 	80
-------------------------------TGAGGTAGTAGGTTGTATAGTT 	9485
-------------------------------TGAGGTAGTAGGTTGTATAGT 	216
-------------------------------TGAGGTAGTAGGTTGTATAG 	17
-------------------------------TGAGGTAGTAGGTTGTATA 	6
--------------------------------GAGGTAGTAGGTTGTATAGTT 	13
----------------------------------GGTAGTAGGTTGTATAGTT 	18
-----------------------------------------------------TAGAATAACATCACTGGAGATA 	1
-----------------------------------------------------TAGAATAACATCACTGGAGA 	1
----------------------------------------------------------------------------CTGTACAACCTCCTAGCTTTCC 	5


Overlaps with: MNEST034166
Overlaps with miRBase pre-miRNAs: dre-let-7a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATAGTT AACTATACAGTCTATTGCCTTCCT up 1 2


Secondary structure

GTTTTTGGTGTCTGGACAAGGTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATCAAACCCTGTTCAGCTGATAACTATACAGTCTATTGCCTTCCTTGTGTCACCTAAGGTCTG
-TTTTTGGTGTCTGGACAAGG 	1
--------------------GTGAGGTAGTAGGTTGTATAGTT 	46
--------------------GTGAGGTAGTAGGTTGTATAGT 	245
--------------------GTGAGGTAGTAGGTTGTATAG 	61
--------------------GTGAGGTAGTAGGTTGTATA 	4
---------------------TGAGGTAGTAGGTTGTATAGTTT 	80
---------------------TGAGGTAGTAGGTTGTATAGTT 	9485
---------------------TGAGGTAGTAGGTTGTATAGT 	216
---------------------TGAGGTAGTAGGTTGTATAG 	17
---------------------TGAGGTAGTAGGTTGTATA 	6
----------------------GAGGTAGTAGGTTGTATAGTT 	13
------------------------GGTAGTAGGTTGTATAGTT 	18
-----------------------------------------------------------------------------CTATACAGTCTATTGCCTTCCT 	1



Overlaps with miRBase pre-miRNAs: dre-let-7a-5
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

GTTTCCCACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTGACACCCTTCCTGTTAGATAACTATACAACTTACTGTCTTTCCTGAAGAGGCTGTAATATC
--------------------GTGAGGTAGTAGGTTGTATAGTT 	46
--------------------GTGAGGTAGTAGGTTGTATAGT 	245
--------------------GTGAGGTAGTAGGTTGTATAG 	61
--------------------GTGAGGTAGTAGGTTGTATA 	4
---------------------TGAGGTAGTAGGTTGTATAGTTT 	80
---------------------TGAGGTAGTAGGTTGTATAGTT 	9485
---------------------TGAGGTAGTAGGTTGTATAGT 	216
---------------------TGAGGTAGTAGGTTGTATAG 	17
---------------------TGAGGTAGTAGGTTGTATA 	6
----------------------GAGGTAGTAGGTTGTATAGTT 	13
------------------------GGTAGTAGGTTGTATAGTT 	18
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCCT 	1
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCC 	15
-----------------------------------------------------------------------CTATACAACTTACTGTCTTT 	1
------------------------------------------------------------------------TATACAACTTACTGTCTTTCCT 	8
------------------------------------------------------------------------TATACAACTTACTGTCTTTCC 	1
-------------------------------------------------------------------------ATACAACTTACTGTCTTTCCT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

AAGAGAGACTGTCGTTTGGGGTGAGGTAGTAGGTTGTATAGTTTGAGGGTTTAACCCTTGCTGTCAGATAACTATACAACTTACTGTCTTTCCCGAAGTGGCCGTAGTGTC
--------------------GTGAGGTAGTAGGTTGTATAGTT 	46
--------------------GTGAGGTAGTAGGTTGTATAGT 	245
--------------------GTGAGGTAGTAGGTTGTATAG 	61
--------------------GTGAGGTAGTAGGTTGTATA 	4
---------------------TGAGGTAGTAGGTTGTATAGTTT 	80
---------------------TGAGGTAGTAGGTTGTATAGTT 	9485
---------------------TGAGGTAGTAGGTTGTATAGT 	216
---------------------TGAGGTAGTAGGTTGTATAG 	17
---------------------TGAGGTAGTAGGTTGTATA 	6
----------------------GAGGTAGTAGGTTGTATAGTT 	13
------------------------GGTAGTAGGTTGTATAGTT 	18
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCC 	15
-----------------------------------------------------------------------CTATACAACTTACTGTCTTT 	1
------------------------------------------------------------------------TATACAACTTACTGTCTTTCC 	1
------------------------------------------------------------------------TATACAACTTACTGTCTTTCCC 	7
-------------------------------------------------------------------------ATACAACTTACTGTCTTTCCCG 	1
-------------------------------------------------------------------------ATACAACTTACTGTCTTTCCC 	1


Overlaps with: MNEST034167
Overlaps with miRBase pre-miRNAs: dre-let-7a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATAGTT CTGTACAGCCTCCTAGCTTTCC up 3 0


Secondary structure

TATTAGAGCGATGTCTCGGGATGAGGTAGTAGGTTGTATAGTTTAGAGTTACAACACGGGAGATAACTGTACAGCCTCCTAGCTTTCCTCGAGCAGACGCCCTCCT
---------------------TGAGGTAGTAGGTTGTATAGTTT 	80
---------------------TGAGGTAGTAGGTTGTATAGTT 	9485
---------------------TGAGGTAGTAGGTTGTATAGT 	216
---------------------TGAGGTAGTAGGTTGTATAG 	17
---------------------TGAGGTAGTAGGTTGTATA 	6
----------------------GAGGTAGTAGGTTGTATAGTT 	13
------------------------GGTAGTAGGTTGTATAGTT 	18
------------------------------------------------------------------CTGTACAGCCTCCTAGCTTTCC 	2
-------------------------------------------------------------------TGTACAGCCTCCTAGCTTTCC 	1


Overlaps with: MNEST034168
Overlaps with miRBase pre-miRNAs: dre-let-7a-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATAGTT CTATACAGTCTATTGCCTTCCC up 1 0


Secondary structure

CTGAGCTAGACATTGTTTTCCTCCACAGTGAACCTGTGTGTTTCTTCAAGGTGAGGTAGTAGGTTGTATAGTTTGTGGGAAGGATCACATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCCTGAGAGACACAATGACCACGAGTGAAAACAAATCATGAAAATAAAGAA
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGTT 	46
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGT 	245
--------------------------------------------------GTGAGGTAGTAGGTTGTATAG 	61
--------------------------------------------------GTGAGGTAGTAGGTTGTATA 	4
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	80
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	9485
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	216
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	17
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	6
----------------------------------------------------GAGGTAGTAGGTTGTATAGTT 	13
------------------------------------------------------GGTAGTAGGTTGTATAGTT 	18


Overlaps with: MNEST034170
Overlaps with miRBase pre-miRNAs: dre-let-7a-6
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATAGTT CTATACAACCTACTGTCTTTCT up 1 0


Secondary structure

GGTTACATGTTGACGGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACACTGGGAGATAACTATACAACCTACTGTCTTTCTCAAAGTCCAAATCAAGCT
---------------------TGAGGTAGTAGGTTGTATAGTTTT 	1
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	281
---------------------TGAGGTAGTAGGTTGTATAGT 	30
---------------------TGAGGTAGTAGGTTGTATAG 	5
---------------------TGAGGTAGTAGGTTGTATA 	2
-------------------------------------------TTAGGGTCACACCCACACTGGGAGA 	1
-------------------------------------------TTAGGGTCACACCCACACTGGGAG 	1


Overlaps with: MNEST034165
Overlaps with miRBase pre-miRNAs: dre-let-7a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATAGTT CTGTACAACCTCCTAGCTTTCC up 3 0


Secondary structure

CCTCCTCAGGGTGTCTGCGGTGCCCCCAGGCTGAGGTAGTAGGTTGTATAGTTTAGAATAACATCACTGGAGATAACTGTACAACCTCCTAGCTTTCCCTGAGATACACACGCTCCCGCCTCAACT
------------------------------CTGAGGTAGTAGGTTGTATAGTT 	1
-------------------------------TGAGGTAGTAGGTTGTATAGTTTAG 	1
-------------------------------TGAGGTAGTAGGTTGTATAGTTT 	2
-------------------------------TGAGGTAGTAGGTTGTATAGTT 	281
-------------------------------TGAGGTAGTAGGTTGTATAGT 	30
-------------------------------TGAGGTAGTAGGTTGTATAG 	5
-------------------------------TGAGGTAGTAGGTTGTATA 	2


Overlaps with: MNEST034166
Overlaps with miRBase pre-miRNAs: dre-let-7a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATAGTT AACTATACAGTCTATTGCCTTCCT up 1 2


Secondary structure

GTTTTTGGTGTCTGGACAAGGTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATCAAACCCTGTTCAGCTGATAACTATACAGTCTATTGCCTTCCTTGTGTCACCTAAGGTCTG
--------------------GTGAGGTAGTAGGTTGTATAGTT 	2
--------------------GTGAGGTAGTAGGTTGTATAGT 	6
--------------------GTGAGGTAGTAGGTTGTATAG 	7
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	281
---------------------TGAGGTAGTAGGTTGTATAGT 	30
---------------------TGAGGTAGTAGGTTGTATAG 	5
---------------------TGAGGTAGTAGGTTGTATA 	2
--------------------------------------------------------------------------------------------------TTGTGTCACCTAAGGTCTG 	2



Overlaps with miRBase pre-miRNAs: dre-let-7a-5
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

GTTTCCCACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTGACACCCTTCCTGTTAGATAACTATACAACTTACTGTCTTTCCTGAAGAGGCTGTAATATC
--------------------GTGAGGTAGTAGGTTGTATAGTT 	2
--------------------GTGAGGTAGTAGGTTGTATAGT 	6
--------------------GTGAGGTAGTAGGTTGTATAG 	7
---------------------TGAGGTAGTAGGTTGTATAGTTTT 	1
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	281
---------------------TGAGGTAGTAGGTTGTATAGT 	30
---------------------TGAGGTAGTAGGTTGTATAG 	5
---------------------TGAGGTAGTAGGTTGTATA 	2
-----------------------------------------------------------------AGATAACTATACAACTTACTGTCT 	1
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCC 	1
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTC 	3
-----------------------------------------------------------------------CTATACAACTTACTGTCTTT 	1
------------------------------------------------------------------------TATACAACTTACTGTCTTTCCT 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

AAGAGAGACTGTCGTTTGGGGTGAGGTAGTAGGTTGTATAGTTTGAGGGTTTAACCCTTGCTGTCAGATAACTATACAACTTACTGTCTTTCCCGAAGTGGCCGTAGTGTC
--------------------GTGAGGTAGTAGGTTGTATAGTT 	2
--------------------GTGAGGTAGTAGGTTGTATAGT 	6
--------------------GTGAGGTAGTAGGTTGTATAG 	7
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	281
---------------------TGAGGTAGTAGGTTGTATAGT 	30
---------------------TGAGGTAGTAGGTTGTATAG 	5
---------------------TGAGGTAGTAGGTTGTATA 	2
-----------------------------------------------------------------AGATAACTATACAACTTACTGTCT 	1
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCC 	1
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTC 	3
-----------------------------------------------------------------------CTATACAACTTACTGTCTTT 	1
-------------------------------------------------------------------------ATACAACTTACTGTCTTTCCC 	1


Overlaps with: MNEST034167
Overlaps with miRBase pre-miRNAs: dre-let-7a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATAGTT CTGTACAGCCTCCTAGCTTTCC up 3 0


Secondary structure

TATTAGAGCGATGTCTCGGGATGAGGTAGTAGGTTGTATAGTTTAGAGTTACAACACGGGAGATAACTGTACAGCCTCCTAGCTTTCCTCGAGCAGACGCCCTCCT
---------------------TGAGGTAGTAGGTTGTATAGTTTAG 	1
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	281
---------------------TGAGGTAGTAGGTTGTATAGT 	30
---------------------TGAGGTAGTAGGTTGTATAG 	5
---------------------TGAGGTAGTAGGTTGTATA 	2


Overlaps with: MNEST034168
Overlaps with miRBase pre-miRNAs: dre-let-7a-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATAGTT CTATACAGTCTATTGCCTTCCC up 1 0


Secondary structure

CTGAGCTAGACATTGTTTTCCTCCACAGTGAACCTGTGTGTTTCTTCAAGGTGAGGTAGTAGGTTGTATAGTTTGTGGGAAGGATCACATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCCTGAGAGACACAATGACCACGAGTGAAAACAAATCATGAAAATAAAGAA
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGTT 	2
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGT 	6
--------------------------------------------------GTGAGGTAGTAGGTTGTATAG 	7
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	2
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	281
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	30
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	5
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	2
-------------------------------------------------------------------------------------------------------------------------------CTGAGAGACACAATGACCACG 	1


Overlaps with: MNEST034170
Overlaps with miRBase pre-miRNAs: dre-let-7a-6
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATAGTT CTATACAACCTACTGTCTTTCT up 1 0


Secondary structure

GGTTACATGTTGACGGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACACTGGGAGATAACTATACAACCTACTGTCTTTCTCAAAGTCCAAATCAAGCT
---------------------TGAGGTAGTAGGTTGTATAGTTT 	10
---------------------TGAGGTAGTAGGTTGTATAGTT 	1434
---------------------TGAGGTAGTAGGTTGTATAGT 	65
---------------------TGAGGTAGTAGGTTGTATAG 	3
----------------------GAGGTAGTAGGTTGTATAGTT 	1
-------------------------------------------TTAGGGTCACACCCACACTGGGAG 	1
-----------------------------------------------------------------------CTATACAACCTACTGTCTTT 	1


Overlaps with: MNEST034165
Overlaps with miRBase pre-miRNAs: dre-let-7a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATAGTT CTGTACAACCTCCTAGCTTTCC up 3 0


Secondary structure

CCTCCTCAGGGTGTCTGCGGTGCCCCCAGGCTGAGGTAGTAGGTTGTATAGTTTAGAATAACATCACTGGAGATAACTGTACAACCTCCTAGCTTTCCCTGAGATACACACGCTCCCGCCTCAACT
-------------------------------TGAGGTAGTAGGTTGTATAGTTT 	10
-------------------------------TGAGGTAGTAGGTTGTATAGTT 	1434
-------------------------------TGAGGTAGTAGGTTGTATAGT 	65
-------------------------------TGAGGTAGTAGGTTGTATAG 	3
--------------------------------GAGGTAGTAGGTTGTATAGTT 	1
-----------------------------------------------------TAGAATAACATCACTGGAGATAA 	1


Overlaps with: MNEST034166
Overlaps with miRBase pre-miRNAs: dre-let-7a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATAGTT AACTATACAGTCTATTGCCTTCCT up 1 2


Secondary structure

GTTTTTGGTGTCTGGACAAGGTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATCAAACCCTGTTCAGCTGATAACTATACAGTCTATTGCCTTCCTTGTGTCACCTAAGGTCTG
--TTTTGGTGTCTGGACAAGG 	1
--------------------GTGAGGTAGTAGGTTGTATAGTT 	4
--------------------GTGAGGTAGTAGGTTGTATAGT 	51
--------------------GTGAGGTAGTAGGTTGTATAG 	16
---------------------TGAGGTAGTAGGTTGTATAGTTT 	10
---------------------TGAGGTAGTAGGTTGTATAGTT 	1434
---------------------TGAGGTAGTAGGTTGTATAGT 	65
---------------------TGAGGTAGTAGGTTGTATAG 	3
----------------------GAGGTAGTAGGTTGTATAGTT 	1



Overlaps with miRBase pre-miRNAs: dre-let-7a-5
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

GTTTCCCACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTGACACCCTTCCTGTTAGATAACTATACAACTTACTGTCTTTCCTGAAGAGGCTGTAATATC
--------------------GTGAGGTAGTAGGTTGTATAGTT 	4
--------------------GTGAGGTAGTAGGTTGTATAGT 	51
--------------------GTGAGGTAGTAGGTTGTATAG 	16
---------------------TGAGGTAGTAGGTTGTATAGTTT 	10
---------------------TGAGGTAGTAGGTTGTATAGTT 	1434
---------------------TGAGGTAGTAGGTTGTATAGT 	65
---------------------TGAGGTAGTAGGTTGTATAG 	3
----------------------GAGGTAGTAGGTTGTATAGTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

AAGAGAGACTGTCGTTTGGGGTGAGGTAGTAGGTTGTATAGTTTGAGGGTTTAACCCTTGCTGTCAGATAACTATACAACTTACTGTCTTTCCCGAAGTGGCCGTAGTGTC
--------------------GTGAGGTAGTAGGTTGTATAGTT 	4
--------------------GTGAGGTAGTAGGTTGTATAGT 	51
--------------------GTGAGGTAGTAGGTTGTATAG 	16
---------------------TGAGGTAGTAGGTTGTATAGTTT 	10
---------------------TGAGGTAGTAGGTTGTATAGTT 	1434
---------------------TGAGGTAGTAGGTTGTATAGT 	65
---------------------TGAGGTAGTAGGTTGTATAG 	3
----------------------GAGGTAGTAGGTTGTATAGTT 	1
------------------------------------------------------------------------TATACAACTTACTGTCTTTCCC 	1


Overlaps with: MNEST034167
Overlaps with miRBase pre-miRNAs: dre-let-7a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATAGTT CTGTACAGCCTCCTAGCTTTCC up 3 0


Secondary structure

TATTAGAGCGATGTCTCGGGATGAGGTAGTAGGTTGTATAGTTTAGAGTTACAACACGGGAGATAACTGTACAGCCTCCTAGCTTTCCTCGAGCAGACGCCCTCCT
---------------------TGAGGTAGTAGGTTGTATAGTTT 	10
---------------------TGAGGTAGTAGGTTGTATAGTT 	1434
---------------------TGAGGTAGTAGGTTGTATAGT 	65
---------------------TGAGGTAGTAGGTTGTATAG 	3
----------------------GAGGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST034168
Overlaps with miRBase pre-miRNAs: dre-let-7a-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATAGTT CTATACAGTCTATTGCCTTCCC up 1 0


Secondary structure

CTGAGCTAGACATTGTTTTCCTCCACAGTGAACCTGTGTGTTTCTTCAAGGTGAGGTAGTAGGTTGTATAGTTTGTGGGAAGGATCACATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCCTGAGAGACACAATGACCACGAGTGAAAACAAATCATGAAAATAAAGAA
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGTT 	4
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGT 	51
--------------------------------------------------GTGAGGTAGTAGGTTGTATAG 	16
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	10
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	1434
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	65
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	3
----------------------------------------------------GAGGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST034170
Overlaps with miRBase pre-miRNAs: dre-let-7a-6
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATAGTT CTATACAACCTACTGTCTTTCT up 1 0


Secondary structure

GGTTACATGTTGACGGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACACTGGGAGATAACTATACAACCTACTGTCTTTCTCAAAGTCCAAATCAAGCT
--------------------ATGAGGTAGTAGGTTGTATAGTT 	1
--------------------ATGAGGTAGTAGGTTGTATAG 	1
---------------------TGAGGTAGTAGGTTGTATAGTTT 	1191
---------------------TGAGGTAGTAGGTTGTATAG 	60
---------------------TGAGGTAGTAGGTTGTATAGTT 	105901
---------------------TGAGGTAGTAGGTTGTATA 	9
---------------------TGAGGTAGTAGGTTGTATAGTTTT 	44
---------------------TGAGGTAGTAGGTTGTATAGT 	1787
----------------------GAGGTAGTAGGTTGTATAGTT 	44
----------------------GAGGTAGTAGGTTGTATAGT 	2
-----------------------AGGTAGTAGGTTGTATAGTT 	4
-----------------------AGGTAGTAGGTTGTATAGT 	1
------------------------GGTAGTAGGTTGTATAGTT 	35
-------------------------------------------TTAGGGTCACACCCACACTGGGAGA 	11
-------------------------------------------TTAGGGTCACACCCACACTGGGAG 	8
-------------------------------------------TTAGGGTCACACCCACACTGGG 	5
-------------------------------------------TTAGGGTCACACCCACACTGGGA 	8
--------------------------------------------TAGGGTCACACCCACACTGGGAGA 	1
--------------------------------------------TAGGGTCACACCCACACTGGGA 	1
----------------------------------------------------------------------ACTATACAACCTACTGTCTTTC 	1
-----------------------------------------------------------------------CTATACAACCTACTGTCTTTCT 	15
-----------------------------------------------------------------------CTATACAACCTACTGTCTTTC 	20
-----------------------------------------------------------------------CTATACAACCTACTGTCTTT 	8


Overlaps with: MNEST034165
Overlaps with miRBase pre-miRNAs: dre-let-7a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATAGTT CTGTACAACCTCCTAGCTTTCC up 3 0


Secondary structure

CCTCCTCAGGGTGTCTGCGGTGCCCCCAGGCTGAGGTAGTAGGTTGTATAGTTTAGAATAACATCACTGGAGATAACTGTACAACCTCCTAGCTTTCCCTGAGATACACACGCTCCCGCCTCAACT
-----------------------------GCTGAGGTAGTAGGTTGTATAGT 	60
-----------------------------GCTGAGGTAGTAGGTTGTATA 	2
-----------------------------GCTGAGGTAGTAGGTTGTATAGTT 	6
-----------------------------GCTGAGGTAGTAGGTTGTATAG 	11
------------------------------CTGAGGTAGTAGGTTGTATAGTT 	19
------------------------------CTGAGGTAGTAGGTTGTATAGT 	32
-------------------------------TGAGGTAGTAGGTTGTATAGTTTA 	3
-------------------------------TGAGGTAGTAGGTTGTATAGTTT 	1191
-------------------------------TGAGGTAGTAGGTTGTATAG 	60
-------------------------------TGAGGTAGTAGGTTGTATAGTTTAGA 	2
-------------------------------TGAGGTAGTAGGTTGTATAGTT 	105901
-------------------------------TGAGGTAGTAGGTTGTATA 	9
-------------------------------TGAGGTAGTAGGTTGTATAGT 	1787
--------------------------------GAGGTAGTAGGTTGTATAGTT 	44
--------------------------------GAGGTAGTAGGTTGTATAGT 	2
---------------------------------AGGTAGTAGGTTGTATAGTT 	4
---------------------------------AGGTAGTAGGTTGTATAGT 	1
----------------------------------GGTAGTAGGTTGTATAGTT 	35
------------------------------------TAGTAGGTTGTATAGTTTAGAAT 	8
-----------------------------------------------------TAGAATAACATCACTGGAGATAA 	6
-----------------------------------------------------TAGAATAACATCACTGGAGATA 	2
----------------------------------------------------------------------AGATAACTGTACAACCTCCTAGC 	2
----------------------------------------------------------------------------CTGTACAACCTCCTAGCTTTCC 	21
----------------------------------------------------------------------------CTGTACAACCTCCTAGCTTTC 	5
-----------------------------------------------------------------------------TGTACAACCTCCTAGCTTTC 	1
-----------------------------------------------------------------------------TGTACAACCTCCTAGCTTTCCCT 	2


Overlaps with: MNEST034166
Overlaps with miRBase pre-miRNAs: dre-let-7a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATAGTT AACTATACAGTCTATTGCCTTCCT up 1 2


Secondary structure

GTTTTTGGTGTCTGGACAAGGTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATCAAACCCTGTTCAGCTGATAACTATACAGTCTATTGCCTTCCTTGTGTCACCTAAGGTCTG
-------------------GGTGAGGTAGTAGGTTGTATA 	1
-------------------GGTGAGGTAGTAGGTTGTATAGT 	1
-------------------GGTGAGGTAGTAGGTTGTATAG 	5
--------------------GTGAGGTAGTAGGTTGTATAGTT 	770
--------------------GTGAGGTAGTAGGTTGTATAGT 	4004
--------------------GTGAGGTAGTAGGTTGTATA 	10
--------------------GTGAGGTAGTAGGTTGTAT 	1
--------------------GTGAGGTAGTAGGTTGTATAGTTT 	15
--------------------GTGAGGTAGTAGGTTGTATAG 	505
---------------------TGAGGTAGTAGGTTGTATAGTTT 	1191
---------------------TGAGGTAGTAGGTTGTATAG 	60
---------------------TGAGGTAGTAGGTTGTATAGTT 	105901
---------------------TGAGGTAGTAGGTTGTATA 	9
---------------------TGAGGTAGTAGGTTGTATAGT 	1787
----------------------GAGGTAGTAGGTTGTATAGTT 	44
----------------------GAGGTAGTAGGTTGTATAGT 	2
-----------------------AGGTAGTAGGTTGTATAGTT 	4
-----------------------AGGTAGTAGGTTGTATAGT 	1
------------------------GGTAGTAGGTTGTATAGTT 	35
-----------------------------------------------------------------------------CTATACAGTCTATTGCCTTCC 	2
-----------------------------------------------------------------------------CTATACAGTCTATTGCCTTCCT 	4



Overlaps with miRBase pre-miRNAs: dre-let-7a-5
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

GTTTCCCACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTGACACCCTTCCTGTTAGATAACTATACAACTTACTGTCTTTCCTGAAGAGGCTGTAATATC
-------------------GGTGAGGTAGTAGGTTGTATA 	1
-------------------GGTGAGGTAGTAGGTTGTATAGT 	1
-------------------GGTGAGGTAGTAGGTTGTATAG 	5
--------------------GTGAGGTAGTAGGTTGTATAGTT 	770
--------------------GTGAGGTAGTAGGTTGTATAGT 	4004
--------------------GTGAGGTAGTAGGTTGTATA 	10
--------------------GTGAGGTAGTAGGTTGTAT 	1
--------------------GTGAGGTAGTAGGTTGTATAGTTT 	15
--------------------GTGAGGTAGTAGGTTGTATAG 	505
---------------------TGAGGTAGTAGGTTGTATAGTTT 	1191
---------------------TGAGGTAGTAGGTTGTATAG 	60
---------------------TGAGGTAGTAGGTTGTATAGTT 	105901
---------------------TGAGGTAGTAGGTTGTATA 	9
---------------------TGAGGTAGTAGGTTGTATAGTTTT 	44
---------------------TGAGGTAGTAGGTTGTATAGT 	1787
----------------------GAGGTAGTAGGTTGTATAGTT 	44
----------------------GAGGTAGTAGGTTGTATAGT 	2
-----------------------AGGTAGTAGGTTGTATAGTT 	4
-----------------------AGGTAGTAGGTTGTATAGT 	1
------------------------GGTAGTAGGTTGTATAGTT 	35
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCC 	106
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTC 	14
-----------------------------------------------------------------------CTATACAACTTACTGTCTTT 	1
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCCT 	6
------------------------------------------------------------------------TATACAACTTACTGTCTTTCCT 	47
-------------------------------------------------------------------------ATACAACTTACTGTCTTTCCT 	10
--------------------------------------------------------------------------TACAACTTACTGTCTTTCC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATAGTT CTATACAACTTACTGTCTTTCC up 1 0


Secondary structure

AAGAGAGACTGTCGTTTGGGGTGAGGTAGTAGGTTGTATAGTTTGAGGGTTTAACCCTTGCTGTCAGATAACTATACAACTTACTGTCTTTCCCGAAGTGGCCGTAGTGTC
-------------------GGTGAGGTAGTAGGTTGTATA 	1
-------------------GGTGAGGTAGTAGGTTGTATAGT 	1
-------------------GGTGAGGTAGTAGGTTGTATAG 	5
--------------------GTGAGGTAGTAGGTTGTATAGTT 	770
--------------------GTGAGGTAGTAGGTTGTATAGT 	4004
--------------------GTGAGGTAGTAGGTTGTATA 	10
--------------------GTGAGGTAGTAGGTTGTAT 	1
--------------------GTGAGGTAGTAGGTTGTATAGTTT 	15
--------------------GTGAGGTAGTAGGTTGTATAG 	505
---------------------TGAGGTAGTAGGTTGTATAGTTT 	1191
---------------------TGAGGTAGTAGGTTGTATAG 	60
---------------------TGAGGTAGTAGGTTGTATAGTT 	105901
---------------------TGAGGTAGTAGGTTGTATA 	9
---------------------TGAGGTAGTAGGTTGTATAGT 	1787
----------------------GAGGTAGTAGGTTGTATAGTT 	44
----------------------GAGGTAGTAGGTTGTATAGT 	2
-----------------------AGGTAGTAGGTTGTATAGTT 	4
-----------------------AGGTAGTAGGTTGTATAGT 	1
------------------------GGTAGTAGGTTGTATAGTT 	35
-------------------------------------------TGAGGGTTTAACCCTTGCTGTCAG 	1
-------------------------------------------------TTTAACCCTTGCTGTCAGATAA 	1
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCC 	106
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTC 	14
-----------------------------------------------------------------------CTATACAACTTACTGTCTTT 	1
-----------------------------------------------------------------------CTATACAACTTACTGTCTTTCCC 	2
------------------------------------------------------------------------TATACAACTTACTGTCTTTCCCG 	1
------------------------------------------------------------------------TATACAACTTACTGTCTTTCCC 	39
-------------------------------------------------------------------------ATACAACTTACTGTCTTTCCCG 	1
-------------------------------------------------------------------------ATACAACTTACTGTCTTTCCC 	6
--------------------------------------------------------------------------TACAACTTACTGTCTTTCC 	1


Overlaps with: MNEST034167
Overlaps with miRBase pre-miRNAs: dre-let-7a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATAGTT CTGTACAGCCTCCTAGCTTTCC up 3 0


Secondary structure

TATTAGAGCGATGTCTCGGGATGAGGTAGTAGGTTGTATAGTTTAGAGTTACAACACGGGAGATAACTGTACAGCCTCCTAGCTTTCCTCGAGCAGACGCCCTCCT
--------------------ATGAGGTAGTAGGTTGTATAGTT 	1
--------------------ATGAGGTAGTAGGTTGTATAG 	1
---------------------TGAGGTAGTAGGTTGTATAGTTTA 	3
---------------------TGAGGTAGTAGGTTGTATAGTTT 	1191
---------------------TGAGGTAGTAGGTTGTATAG 	60
---------------------TGAGGTAGTAGGTTGTATAGTTTAGA 	2
---------------------TGAGGTAGTAGGTTGTATAGTT 	105901
---------------------TGAGGTAGTAGGTTGTATA 	9
---------------------TGAGGTAGTAGGTTGTATAGT 	1787
----------------------GAGGTAGTAGGTTGTATAGTT 	44
----------------------GAGGTAGTAGGTTGTATAGT 	2
-----------------------AGGTAGTAGGTTGTATAGTT 	4
-----------------------AGGTAGTAGGTTGTATAGT 	1
------------------------GGTAGTAGGTTGTATAGTT 	35
------------------------------------------------------------------CTGTACAGCCTCCTAGCTTTCC 	13


Overlaps with: MNEST034168
Overlaps with miRBase pre-miRNAs: dre-let-7a-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATAGTT CTATACAGTCTATTGCCTTCCC up 1 0


Secondary structure

CTGAGCTAGACATTGTTTTCCTCCACAGTGAACCTGTGTGTTTCTTCAAGGTGAGGTAGTAGGTTGTATAGTTTGTGGGAAGGATCACATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCCTGAGAGACACAATGACCACGAGTGAAAACAAATCATGAAAATAAAGAA
-------------------------------ACCTGTGTGTTTCTTCAAGG 	3
-------------------------------------------------GGTGAGGTAGTAGGTTGTATA 	1
-------------------------------------------------GGTGAGGTAGTAGGTTGTATAGT 	1
-------------------------------------------------GGTGAGGTAGTAGGTTGTATAG 	5
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGTT 	770
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGT 	4004
--------------------------------------------------GTGAGGTAGTAGGTTGTATA 	10
--------------------------------------------------GTGAGGTAGTAGGTTGTAT 	1
--------------------------------------------------GTGAGGTAGTAGGTTGTATAGTTT 	15
--------------------------------------------------GTGAGGTAGTAGGTTGTATAG 	505
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	1191
---------------------------------------------------TGAGGTAGTAGGTTGTATAG 	60
---------------------------------------------------TGAGGTAGTAGGTTGTATAGTT 	105901
---------------------------------------------------TGAGGTAGTAGGTTGTATA 	9
---------------------------------------------------TGAGGTAGTAGGTTGTATAGT 	1787
----------------------------------------------------GAGGTAGTAGGTTGTATAGTT 	44
----------------------------------------------------GAGGTAGTAGGTTGTATAGT 	2
-----------------------------------------------------AGGTAGTAGGTTGTATAGTT 	4
-----------------------------------------------------AGGTAGTAGGTTGTATAGT 	1
------------------------------------------------------GGTAGTAGGTTGTATAGTT 	35
----------------------------------------------------------------------------------------------------------CTATACAGTCTATTGCCTTCC 	2


Overlaps with: MNEST034170
Overlaps with miRBase pre-miRNAs: dre-let-7a-6
HuntMi prediction: true miRNA