miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAGGTAGTAGGTTGTATAGTT

selected species: Gallus gallus



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATAGTT CTATACAATCTACTGTCTTTCC up 1 0


Secondary structure

GTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTTATGCCCTGCCTGTCAGATAACTATACAATCTACTGTCTTTCCTGAAGTGG
----------GTGAGGTAGTAGGTTGTATAGT 	8
----------GTGAGGTAGTAGGTTGTATAGTT 	9
----------GTGAGGTAGTAGGTTGTATAGTTT 	2
-----------TGAGGTAGTAGGTTGTATAGTTT 	2360
-----------TGAGGTAGTAGGTTGTATAGTT 	26141
-----------TGAGGTAGTAGGTTGTATA 	2
-----------TGAGGTAGTAGGTTGTATAG 	38
-----------TGAGGTAGTAGGTTGTATAGT 	727
-----------TGAGGTAGTAGGTTGTATAGTTTT 	110
------------GAGGTAGTAGGTTGTATAGTT 	38
------------GAGGTAGTAGGTTGTATAGTTT 	3
-------------AGGTAGTAGGTTGTATAGTTT 	1
-------------AGGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST025870
Overlaps with miRBase pre-miRNAs: gga-let-7a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATAGTT CTATACAATCTACTGTCTTTCC up 1 0


Secondary structure

GAAGATGCCTGCACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCATACCCGCAACTGGGAGATAACTATACAATCTACTGTCTTTCCTAAAGCAGCAGAAAATCA
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2360
---------------------TGAGGTAGTAGGTTGTATAGTT 	26141
---------------------TGAGGTAGTAGGTTGTATA 	2
---------------------TGAGGTAGTAGGTTGTATAG 	38
---------------------TGAGGTAGTAGGTTGTATAGT 	727
---------------------TGAGGTAGTAGGTTGTATAGTTTT 	110
----------------------GAGGTAGTAGGTTGTATAGTT 	38
----------------------GAGGTAGTAGGTTGTATAGTTT 	3
-----------------------AGGTAGTAGGTTGTATAGTTT 	1
-----------------------AGGTAGTAGGTTGTATAGTT 	1


Overlaps with: MNEST025868
Overlaps with miRBase pre-miRNAs: gga-let-7a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATAGTT CTGTACAACCTCCTAGCTTTCC up 3 0


Secondary structure

GGTGGGTGGCTTTCAGCATTTTTGACTGCATGCATCCAGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACACCAAGGGAGATAACTGTACAACCTCCTAGCTTTCCTTGGGTCTTGCACAAAGCGGCGTGATGAGCGACCATAA
---------------------------------------GTTGAGGTAGTAGGTTGTATAGT 	1
----------------------------------------TTGAGGTAGTAGGTTGTATAGT 	1
-----------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	2360
-----------------------------------------TGAGGTAGTAGGTTGTATAGTT 	26141
-----------------------------------------TGAGGTAGTAGGTTGTATA 	2
-----------------------------------------TGAGGTAGTAGGTTGTATAG 	38
-----------------------------------------TGAGGTAGTAGGTTGTATAGT 	727
-----------------------------------------TGAGGTAGTAGGTTGTATAGTTTA 	11
------------------------------------------GAGGTAGTAGGTTGTATAGTT 	38
------------------------------------------GAGGTAGTAGGTTGTATAGTTT 	3
-------------------------------------------AGGTAGTAGGTTGTATAGTTT 	1
-------------------------------------------AGGTAGTAGGTTGTATAGTT 	1
---------------------------------------------------------------TAGAATTACACCAAGGGAGATAA 	1


Overlaps with: MNEST025869
Overlaps with miRBase pre-miRNAs: gga-let-7a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATAGTT CTATACAGTCTATTGCCTTCCT up 1 0


Secondary structure

CTCTGTGGAGGTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATTCTGTCCCATTTCAGGTGATAACTATACAGTCTATTGCCTTCCTTAAAGAGC
----------GTGAGGTAGTAGGTTGTATAGT 	8
----------GTGAGGTAGTAGGTTGTATAGTT 	9
----------GTGAGGTAGTAGGTTGTATAGTTT 	2
-----------TGAGGTAGTAGGTTGTATAGTTT 	2360
-----------TGAGGTAGTAGGTTGTATAGTT 	26141
-----------TGAGGTAGTAGGTTGTATA 	2
-----------TGAGGTAGTAGGTTGTATAG 	38
-----------TGAGGTAGTAGGTTGTATAGT 	727
------------GAGGTAGTAGGTTGTATAGTT 	38
------------GAGGTAGTAGGTTGTATAGTTT 	3
-------------AGGTAGTAGGTTGTATAGTTT 	1
-------------AGGTAGTAGGTTGTATAGTT 	1
--------------------------------------------------------------------CTATACAGTCTATTGCCTTCCT 	1


Overlaps with: MNEST025877
Overlaps with miRBase pre-miRNAs: gga-let-7j
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Gallus gallus GSM388803 TGAGGTAGTAGGTTGTATAGTT CTATACAATCTACTGTCTTTCC up 1 0


Secondary structure

GTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTTATGCCCTGCCTGTCAGATAACTATACAATCTACTGTCTTTCCTGAAGTGG
-----------TGAGGTAGTAGGTTGTATAGTT 	95
-----------TGAGGTAGTAGGTTGTATAGT 	34


Overlaps with: MNEST025870
Overlaps with miRBase pre-miRNAs: gga-let-7a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Gallus gallus GSM388803 TGAGGTAGTAGGTTGTATAGTT CTATACAATCTACTGTCTTTCC up 1 0


Secondary structure

GAAGATGCCTGCACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCATACCCGCAACTGGGAGATAACTATACAATCTACTGTCTTTCCTAAAGCAGCAGAAAATCA
---------------------TGAGGTAGTAGGTTGTATAGTT 	95
---------------------TGAGGTAGTAGGTTGTATAGT 	34


Overlaps with: MNEST025868
Overlaps with miRBase pre-miRNAs: gga-let-7a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Gallus gallus GSM388803 TGAGGTAGTAGGTTGTATAGTT CTGTACAACCTCCTAGCTTTCC up 3 0


Secondary structure

GGTGGGTGGCTTTCAGCATTTTTGACTGCATGCATCCAGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACACCAAGGGAGATAACTGTACAACCTCCTAGCTTTCCTTGGGTCTTGCACAAAGCGGCGTGATGAGCGACCATAA
-----------------------------------------TGAGGTAGTAGGTTGTATAGTT 	95
-----------------------------------------TGAGGTAGTAGGTTGTATAGT 	34


Overlaps with: MNEST025869
Overlaps with miRBase pre-miRNAs: gga-let-7a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Gallus gallus GSM388803 TGAGGTAGTAGGTTGTATAGTT CTATACAGTCTATTGCCTTCCT up 1 0


Secondary structure

CTCTGTGGAGGTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATTCTGTCCCATTTCAGGTGATAACTATACAGTCTATTGCCTTCCTTAAAGAGC
-----------TGAGGTAGTAGGTTGTATAGTT 	95
-----------TGAGGTAGTAGGTTGTATAGT 	34


Overlaps with: MNEST025877
Overlaps with miRBase pre-miRNAs: gga-let-7j
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATAGTT CTATACAATCTACTGTCTTTCC up 1 0


Secondary structure

GTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTTATGCCCTGCCTGTCAGATAACTATACAATCTACTGTCTTTCCTGAAGTGG
---------GGTGAGGTAGTAGGTTGTATAGT 	1
---------GGTGAGGTAGTAGGTTGTATAG 	2
----------GTGAGGTAGTAGGTTGTATAGT 	37
----------GTGAGGTAGTAGGTTGTATAGTT 	38
----------GTGAGGTAGTAGGTTGTATA 	4
----------GTGAGGTAGTAGGTTGTATAG 	3
----------GTGAGGTAGTAGGTTGTATAGTTT 	5
-----------TGAGGTAGTAGGTTGTATAGTTTT 	100
-----------TGAGGTAGTAGGTTGTATAGTT 	42513
-----------TGAGGTAGTAGGTTGTATAGTTT 	2892
-----------TGAGGTAGTAGGTTGTATAG 	277
-----------TGAGGTAGTAGGTTGTATA 	70
-----------TGAGGTAGTAGGTTGTATAGTTTTA 	1
-----------TGAGGTAGTAGGTTGTATAGT 	3961
------------GAGGTAGTAGGTTGTATAGTT 	28
------------GAGGTAGTAGGTTGTATAGTTT 	5
-------------AGGTAGTAGGTTGTATAGTTT 	4
-------------AGGTAGTAGGTTGTATAGTT 	21
--------------GGTAGTAGGTTGTATAGTT 	3
-------------------------------------------------------------CTATACAATCTACTGTCTTTC 	1
-------------------------------------------------------------CTATACAATCTACTGTCTTT 	1


Overlaps with: MNEST025870
Overlaps with miRBase pre-miRNAs: gga-let-7a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATAGTT CTATACAATCTACTGTCTTTCC up 1 0


Secondary structure

GAAGATGCCTGCACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCATACCCGCAACTGGGAGATAACTATACAATCTACTGTCTTTCCTAAAGCAGCAGAAAATCA
---------------------TGAGGTAGTAGGTTGTATAGTTTT 	100
---------------------TGAGGTAGTAGGTTGTATAGTT 	42513
---------------------TGAGGTAGTAGGTTGTATAGTTT 	2892
---------------------TGAGGTAGTAGGTTGTATAG 	277
---------------------TGAGGTAGTAGGTTGTATA 	70
---------------------TGAGGTAGTAGGTTGTATAGTTTTA 	1
---------------------TGAGGTAGTAGGTTGTATAGT 	3961
----------------------GAGGTAGTAGGTTGTATAGTT 	28
----------------------GAGGTAGTAGGTTGTATAGTTT 	5
-----------------------AGGTAGTAGGTTGTATAGTTT 	4
-----------------------AGGTAGTAGGTTGTATAGTT 	21
------------------------GGTAGTAGGTTGTATAGTT 	3
---------------------------------------------------------GCAACTGGGAGATAACTATACAATCT 	1
------------------------------------------------------------------------CTATACAATCTACTGTCTTTC 	1
------------------------------------------------------------------------CTATACAATCTACTGTCTTT 	1


Overlaps with: MNEST025868
Overlaps with miRBase pre-miRNAs: gga-let-7a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATAGTT CTGTACAACCTCCTAGCTTTCC up 3 0


Secondary structure

GGTGGGTGGCTTTCAGCATTTTTGACTGCATGCATCCAGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACACCAAGGGAGATAACTGTACAACCTCCTAGCTTTCCTTGGGTCTTGCACAAAGCGGCGTGATGAGCGACCATAA
-------------------TTTTGACTGCATGCATCCAGGT 	1
---------------------TTGACTGCATGCATCCAGG 	1
---------------------TTGACTGCATGCATCCAGGT 	5
----------------------TGACTGCATGCATCCAGGT 	1
---------------------------------------GTTGAGGTAGTAGGTTGTATAGT 	2
----------------------------------------TTGAGGTAGTAGGTTGTATAGTT 	2
----------------------------------------TTGAGGTAGTAGGTTGTATAGT 	9
-----------------------------------------TGAGGTAGTAGGTTGTATAGTTTAGA 	1
-----------------------------------------TGAGGTAGTAGGTTGTATAGTT 	42513
-----------------------------------------TGAGGTAGTAGGTTGTATAGTTT 	2892
-----------------------------------------TGAGGTAGTAGGTTGTATAG 	277
-----------------------------------------TGAGGTAGTAGGTTGTATA 	70
-----------------------------------------TGAGGTAGTAGGTTGTATAGT 	3961
-----------------------------------------TGAGGTAGTAGGTTGTATAGTTTA 	23
------------------------------------------GAGGTAGTAGGTTGTATAGTT 	28
------------------------------------------GAGGTAGTAGGTTGTATAGTTT 	5
-------------------------------------------AGGTAGTAGGTTGTATAGTTT 	4
-------------------------------------------AGGTAGTAGGTTGTATAGTT 	21
--------------------------------------------GGTAGTAGGTTGTATAGTT 	3
----------------------------------------------TAGTAGGTTGTATAGTTTAGA 	1
---------------------------------------------------------------TAGAATTACACCAAGGGAGATAA 	3
---------------------------------------------------------------------TACACCAAGGGAGATAACTGTAC 	1
---------------------------------------------------------------------TACACCAAGGGAGATAACTGTACA 	1
--------------------------------------------------------------------------------------CTGTACAACCTCCTAGCTTTCC 	1


Overlaps with: MNEST025869
Overlaps with miRBase pre-miRNAs: gga-let-7a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATAGTT CTATACAGTCTATTGCCTTCCT up 1 0


Secondary structure

CTCTGTGGAGGTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATTCTGTCCCATTTCAGGTGATAACTATACAGTCTATTGCCTTCCTTAAAGAGC
---------GGTGAGGTAGTAGGTTGTATAGT 	1
---------GGTGAGGTAGTAGGTTGTATAG 	2
----------GTGAGGTAGTAGGTTGTATAGT 	37
----------GTGAGGTAGTAGGTTGTATAGTT 	38
----------GTGAGGTAGTAGGTTGTATA 	4
----------GTGAGGTAGTAGGTTGTATAG 	3
----------GTGAGGTAGTAGGTTGTATAGTTT 	5
-----------TGAGGTAGTAGGTTGTATAGTT 	42513
-----------TGAGGTAGTAGGTTGTATAGTTT 	2892
-----------TGAGGTAGTAGGTTGTATAG 	277
-----------TGAGGTAGTAGGTTGTATA 	70
-----------TGAGGTAGTAGGTTGTATAGT 	3961
------------GAGGTAGTAGGTTGTATAGTT 	28
------------GAGGTAGTAGGTTGTATAGTTT 	5
-------------AGGTAGTAGGTTGTATAGTTT 	4
-------------AGGTAGTAGGTTGTATAGTT 	21
--------------GGTAGTAGGTTGTATAGTT 	3
--------------------------------------------------------------------CTATACAGTCTATTGCCTTCCT 	1


Overlaps with: MNEST025877
Overlaps with miRBase pre-miRNAs: gga-let-7j
HuntMi prediction: true miRNA