miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAGGTTGTATGGTT

selected species: Danio rerio



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGTGGACGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACACTCATTTC
---------------------TGAGGTAGTAGGTTGTATGGTTTCG 	1
---------------------TGAGGTAGTAGGTTGTATGGTT 	9
---------------------TGAGGTAGTAGGTTGTATGGT 	1


Overlaps with: MNEST034173
Overlaps with miRBase pre-miRNAs: dre-let-7c-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540644 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGAGAGTGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTAGAATTTTGCCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCTCACAAGCCAG
---------------------TGAGGTAGTAGGTTGTATGGTT 	9
---------------------TGAGGTAGTAGGTTGTATGGT 	1
-----------------------------TAGGTTGTATGGTTTAGAATT 	1


Overlaps with: MNEST034172
Overlaps with miRBase pre-miRNAs: dre-let-7c-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGTGGACGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACACTCATTTC
-------------------GCTGAGGTAGTAGGTTGTATGGTT 	1
-------------------GCTGAGGTAGTAGGTTGTATGGT 	11
-------------------GCTGAGGTAGTAGGTTGTATGG 	4
--------------------CTGAGGTAGTAGGTTGTATGGTTT 	2
--------------------CTGAGGTAGTAGGTTGTATGGTT 	52
--------------------CTGAGGTAGTAGGTTGTATGGT 	98
--------------------CTGAGGTAGTAGGTTGTATGG 	3
---------------------TGAGGTAGTAGGTTGTATGGTTT 	42
---------------------TGAGGTAGTAGGTTGTATGGT 	133
---------------------TGAGGTAGTAGGTTGTATG 	7
---------------------TGAGGTAGTAGGTTGTATGGTT 	4690
---------------------TGAGGTAGTAGGTTGTATGG 	9
----------------------GAGGTAGTAGGTTGTATGGTT 	5
------------------------GGTAGTAGGTTGTATGGTT 	2
--------------------------TAGTAGGTTGTATGGTTTCGA 	1
-------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	2
--------------------------------------------------------------TTAACTGTACAACCTTCTAGC 	2
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	12
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTC 	2
-------------------------------------------------------------------TGTACAACCTTCTAGCTTTCCT 	2


Overlaps with: MNEST034173
Overlaps with miRBase pre-miRNAs: dre-let-7c-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540645 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGAGAGTGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTAGAATTTTGCCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCTCACAAGCCAG
TGAGAGTGTGTGCATCCAGGC 	1
--AGAGTGTGTGCATCCAGGC 	1
-------------------GCTGAGGTAGTAGGTTGTATGGTT 	1
-------------------GCTGAGGTAGTAGGTTGTATGGT 	11
-------------------GCTGAGGTAGTAGGTTGTATGG 	4
--------------------CTGAGGTAGTAGGTTGTATGGTTT 	2
--------------------CTGAGGTAGTAGGTTGTATGGTT 	52
--------------------CTGAGGTAGTAGGTTGTATGGT 	98
--------------------CTGAGGTAGTAGGTTGTATGG 	3
---------------------TGAGGTAGTAGGTTGTATGGTTT 	42
---------------------TGAGGTAGTAGGTTGTATGGT 	133
---------------------TGAGGTAGTAGGTTGTATG 	7
---------------------TGAGGTAGTAGGTTGTATGGTT 	4690
---------------------TGAGGTAGTAGGTTGTATGG 	9
----------------------GAGGTAGTAGGTTGTATGGTT 	5
------------------------GGTAGTAGGTTGTATGGTT 	2
-------------------------------------------TAGAATTTTGCCCTGGGAGTTAA 	3
-------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	2
--------------------------------------------------------------TTAACTGTACAACCTTCTAGC 	2
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	12
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTC 	2
-------------------------------------------------------------------TGTACAACCTTCTAGCTTTCCT 	2


Overlaps with: MNEST034172
Overlaps with miRBase pre-miRNAs: dre-let-7c-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGTGGACGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACACTCATTTC
--------------------CTGAGGTAGTAGGTTGTATGGTT 	1
--------------------CTGAGGTAGTAGGTTGTATGGT 	1
---------------------TGAGGTAGTAGGTTGTATGGTTTCG 	1
---------------------TGAGGTAGTAGGTTGTATGGTTTC 	1
---------------------TGAGGTAGTAGGTTGTATGGTTT 	1
---------------------TGAGGTAGTAGGTTGTATGGTT 	60
---------------------TGAGGTAGTAGGTTGTATGGT 	3
----------------------------------------------------------------AACTGTACAACCTTCTAGCTTTCC 	1


Overlaps with: MNEST034173
Overlaps with miRBase pre-miRNAs: dre-let-7c-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540642 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGAGAGTGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTAGAATTTTGCCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCTCACAAGCCAG
-GAGAGTGTGTGCATCCAGGC 	6
--AGAGTGTGTGCATCCAGGC 	2
--------------------CTGAGGTAGTAGGTTGTATGGTT 	1
--------------------CTGAGGTAGTAGGTTGTATGGT 	1
---------------------TGAGGTAGTAGGTTGTATGGTTT 	1
---------------------TGAGGTAGTAGGTTGTATGGTT 	60
---------------------TGAGGTAGTAGGTTGTATGGT 	3
-----------------------------TAGGTTGTATGGTTTAGAA 	1
----------------------------------------------------------------AACTGTACAACCTTCTAGCTTTCC 	1


Overlaps with: MNEST034172
Overlaps with miRBase pre-miRNAs: dre-let-7c-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGTGGACGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACACTCATTTC
-------------------GCTGAGGTAGTAGGTTGTATGGTTT 	1
-------------------GCTGAGGTAGTAGGTTGTATGGTT 	3
-------------------GCTGAGGTAGTAGGTTGTATGGT 	7
--------------------CTGAGGTAGTAGGTTGTATGGTTT 	2
--------------------CTGAGGTAGTAGGTTGTATGGTT 	52
--------------------CTGAGGTAGTAGGTTGTATGGT 	50
---------------------TGAGGTAGTAGGTTGTATGGTTT 	19
---------------------TGAGGTAGTAGGTTGTATGGTT 	2133
---------------------TGAGGTAGTAGGTTGTATGGT 	39
---------------------TGAGGTAGTAGGTTGTATGG 	2
---------------------TGAGGTAGTAGGTTGTATG 	1
----------------------GAGGTAGTAGGTTGTATGGTT 	3
------------------------GGTAGTAGGTTGTATGGTT 	1
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	1
-------------------------------------------------------------------TGTACAACCTTCTAGCTTTCCT 	1


Overlaps with: MNEST034173
Overlaps with miRBase pre-miRNAs: dre-let-7c-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Danio rerio GSM540643 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGAGAGTGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTAGAATTTTGCCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCTCACAAGCCAG
-------------------GCTGAGGTAGTAGGTTGTATGGTTT 	1
-------------------GCTGAGGTAGTAGGTTGTATGGTT 	3
-------------------GCTGAGGTAGTAGGTTGTATGGT 	7
--------------------CTGAGGTAGTAGGTTGTATGGTTT 	2
--------------------CTGAGGTAGTAGGTTGTATGGTT 	52
--------------------CTGAGGTAGTAGGTTGTATGGT 	50
---------------------TGAGGTAGTAGGTTGTATGGTTT 	19
---------------------TGAGGTAGTAGGTTGTATGGTT 	2133
---------------------TGAGGTAGTAGGTTGTATGGT 	39
---------------------TGAGGTAGTAGGTTGTATGG 	2
---------------------TGAGGTAGTAGGTTGTATG 	1
----------------------GAGGTAGTAGGTTGTATGGTT 	3
------------------------GGTAGTAGGTTGTATGGTT 	1
-------------------------------------------TAGAATTTTGCCCTGGGAGTTAA 	1
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	1
-------------------------------------------------------------------TGTACAACCTTCTAGCTTTCCT 	1


Overlaps with: MNEST034172
Overlaps with miRBase pre-miRNAs: dre-let-7c-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGTGGACGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACACTCATTTC
-------------------GCTGAGGTAGTAGGTTGTATGGTT 	67
-------------------GCTGAGGTAGTAGGTTGTATGGT 	230
-------------------GCTGAGGTAGTAGGTTGTATGG 	35
-------------------GCTGAGGTAGTAGGTTGTATG 	1
--------------------CTGAGGTAGTAGGTTGTATGGTT 	1564
--------------------CTGAGGTAGTAGGTTGTATGGT 	2032
--------------------CTGAGGTAGTAGGTTGTATGG 	10
--------------------CTGAGGTAGTAGGTTGTATG 	3
--------------------CTGAGGTAGTAGGTTGTATGGTTT 	24
---------------------TGAGGTAGTAGGTTGTATGGTTT 	510
---------------------TGAGGTAGTAGGTTGTATGGTT 	50729
---------------------TGAGGTAGTAGGTTGTATGGT 	942
---------------------TGAGGTAGTAGGTTGTATG 	13
---------------------TGAGGTAGTAGGTTGTATGG 	51
----------------------GAGGTAGTAGGTTGTATGGTT 	37
----------------------GAGGTAGTAGGTTGTATGGT 	2
------------------------GGTAGTAGGTTGTATGGTT 	6
--------------------------TAGTAGGTTGTATGGTTTCGAAT 	1
-----------------------------TAGGTTGTATGGTTTCGAATGAC 	2
------------------------------------------TTCGAATGACACCATGGGAGTTAAC 	1
-----------------------------------------------------------GAGTTAACTGTACAACCTTCT 	1
------------------------------------------------------------AGTTAACTGTACAACCTTCTAGC 	1
-------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	63
--------------------------------------------------------------TTAACTGTACAACCTTCTAGC 	2
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	83
------------------------------------------------------------------CTGTACAACCTTCTAGCTTT 	1
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCCT 	2
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTC 	12
-------------------------------------------------------------------TGTACAACCTTCTAGCTTTCCT 	14


Overlaps with: MNEST034173
Overlaps with miRBase pre-miRNAs: dre-let-7c-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Danio rerio GSM540646 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

TGAGAGTGTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTAGAATTTTGCCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCTCACAAGCCAG
TGAGAGTGTGTGCATCCAGGC 	4
-------------------GCTGAGGTAGTAGGTTGTATGGTT 	67
-------------------GCTGAGGTAGTAGGTTGTATGGT 	230
-------------------GCTGAGGTAGTAGGTTGTATGG 	35
-------------------GCTGAGGTAGTAGGTTGTATG 	1
--------------------CTGAGGTAGTAGGTTGTATGGTT 	1564
--------------------CTGAGGTAGTAGGTTGTATGGT 	2032
--------------------CTGAGGTAGTAGGTTGTATGG 	10
--------------------CTGAGGTAGTAGGTTGTATG 	3
--------------------CTGAGGTAGTAGGTTGTATGGTTT 	24
---------------------TGAGGTAGTAGGTTGTATGGTTT 	510
---------------------TGAGGTAGTAGGTTGTATGGTT 	50729
---------------------TGAGGTAGTAGGTTGTATGGT 	942
---------------------TGAGGTAGTAGGTTGTATG 	13
---------------------TGAGGTAGTAGGTTGTATGG 	51
----------------------GAGGTAGTAGGTTGTATGGTT 	37
----------------------GAGGTAGTAGGTTGTATGGT 	2
------------------------GGTAGTAGGTTGTATGGTT 	6
--------------------------TAGTAGGTTGTATGGTTTAGAATT 	1
--------------------------TAGTAGGTTGTATGGTTTAGAAT 	2
-----------------------------TAGGTTGTATGGTTTAGAATT 	1
-------------------------------------------TAGAATTTTGCCCTGGGAGTTAA 	76
-------------------------------------------TAGAATTTTGCCCTGGGAGTTA 	4
--------------------------------------------AGAATTTTGCCCTGGGAGTTAA 	2
-----------------------------------------------------------GAGTTAACTGTACAACCTTCT 	1
------------------------------------------------------------AGTTAACTGTACAACCTTCTAGC 	1
-------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	63
--------------------------------------------------------------TTAACTGTACAACCTTCTAGC 	2
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	83
------------------------------------------------------------------CTGTACAACCTTCTAGCTTT 	1
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCCT 	2
------------------------------------------------------------------CTGTACAACCTTCTAGCTTTC 	12
-------------------------------------------------------------------TGTACAACCTTCTAGCTTTCCT 	14


Overlaps with: MNEST034172
Overlaps with miRBase pre-miRNAs: dre-let-7c-1
HuntMi prediction: true miRNA