miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAGGTTGTATGGTT

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

GGTCACCGTCGGAAGCTGTGTGCATCCGGGTTGAGGTAGTAGGTTGTATGGTTTAGAGTTACACCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCACACTTGAGCCATCGAGGAAT
-----------------------------GTTGAGGTAGTAGGTTGTATGGTT 	52
-----------------------------GTTGAGGTAGTAGGTTGTATGGTTT 	2
-----------------------------GTTGAGGTAGTAGGTTGTATGGT 	7
-----------------------------GTTGAGGTAGTAGGTTGTATGG 	2
------------------------------TTGAGGTAGTAGGTTGTATGG 	1
------------------------------TTGAGGTAGTAGGTTGTATGGTT 	147
------------------------------TTGAGGTAGTAGGTTGTATGGT 	107
------------------------------TTGAGGTAGTAGGTTGTATGGTTT 	14
-------------------------------TGAGGTAGTAGGTTGTATGGT 	823
-------------------------------TGAGGTAGTAGGTTGTATGG 	64
-------------------------------TGAGGTAGTAGGTTGTATG 	3
-------------------------------TGAGGTAGTAGGTTGTATGGTTTA 	21
-------------------------------TGAGGTAGTAGGTTGTATGGTTT 	2520
-------------------------------TGAGGTAGTAGGTTGTATGGTT 	32663
--------------------------------GAGGTAGTAGGTTGTATGGTT 	123
--------------------------------GAGGTAGTAGGTTGTATGGTTT 	12
--------------------------------GAGGTAGTAGGTTGTATGGT 	1
---------------------------------AGGTAGTAGGTTGTATGGTT 	5
----------------------------------GGTAGTAGGTTGTATGGTTT 	1
------------------------------------TAGTAGGTTGTATGGTTTAGAGTT 	2
-----------------------------------------------------TAGAGTTACACCCTGGGAGTTAA 	1


Overlaps with: MNEST031755 MNEST032641
Overlaps with miRBase pre-miRNAs: tgu-let-7c-2 ggo-let-7c tgu-let-7c-1 cfa-let-7c gga-let-7c rno-let-7c-1 eca-let-7c mmu-let-7c-1 cgr-let-7c ptr-let-7c mml-let-7c ppy-let-7c bta-let-7c hsa-let-7c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TGAGGTAGTAGGTTGTATGGTT CTGTACAACCTTCTAGCTTTCC up 3 0


Secondary structure

GGTCACCGTCGGAAGCTGTGTGCATCCGGGTTGAGGTAGTAGGTTGTATGGTTTAGAGTTACACCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCACACTTGAGCCATCGAGGAAT
-----------------------------GTTGAGGTAGTAGGTTGTATGGTT 	93
-----------------------------GTTGAGGTAGTAGGTTGTATGGTTT 	3
-----------------------------GTTGAGGTAGTAGGTTGTATGGT 	29
------------------------------TTGAGGTAGTAGGTTGTATGGTTT 	7
------------------------------TTGAGGTAGTAGGTTGTATGGTT 	215
------------------------------TTGAGGTAGTAGGTTGTATGG 	7
------------------------------TTGAGGTAGTAGGTTGTATGGT 	239
-------------------------------TGAGGTAGTAGGTTGTATGGT 	4857
-------------------------------TGAGGTAGTAGGTTGTATGGTTTAGA 	1
-------------------------------TGAGGTAGTAGGTTGTATGGTTTA 	30
-------------------------------TGAGGTAGTAGGTTGTATGGTTT 	3361
-------------------------------TGAGGTAGTAGGTTGTATGGTT 	87111
-------------------------------TGAGGTAGTAGGTTGTATGG 	353
-------------------------------TGAGGTAGTAGGTTGTATG 	24
--------------------------------GAGGTAGTAGGTTGTATGGTT 	44
--------------------------------GAGGTAGTAGGTTGTATGGTTT 	1
--------------------------------GAGGTAGTAGGTTGTATGGT 	4
---------------------------------AGGTAGTAGGTTGTATGGTTTA 	1
---------------------------------AGGTAGTAGGTTGTATGGTTT 	2
---------------------------------AGGTAGTAGGTTGTATGGTT 	20
----------------------------------GGTAGTAGGTTGTATGGTT 	2
------------------------------------TAGTAGGTTGTATGGTTTAGAGT 	1
-----------------------------------------------------TAGAGTTACACCCTGGGAGTTAA 	3
-----------------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	1
----------------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	1


Overlaps with: MNEST031755 MNEST032641
Overlaps with miRBase pre-miRNAs: tgu-let-7c-2 ggo-let-7c tgu-let-7c-1 cfa-let-7c gga-let-7c rno-let-7c-1 eca-let-7c mmu-let-7c-1 cgr-let-7c ptr-let-7c mml-let-7c ppy-let-7c bta-let-7c hsa-let-7c
HuntMi prediction: true miRNA