miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAGGTTGTGTGGTT

selected species: Danio rerio



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 TGAGGTAGTAGGTTGTGTGGTT CTATACAACCTACTGCCTTCCC up 1 0


Secondary structure

GTGGCTGATGTTCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTAGTGATTTTGCCCCATCAGGAGTTAACTATACAACCTACTGCCTTCCCTGAAGGGCAGCGAAACAG
--------------------GTGAGGTAGTAGGTTGTGTGGTT 	14
--------------------GTGAGGTAGTAGGTTGTGTGGT 	15
---------------------TGAGGTAGTAGGTTGTGTGGTTT 	2
---------------------TGAGGTAGTAGGTTGTGTGGTT 	54
---------------------TGAGGTAGTAGGTTGTGTGG 	1
---------------------TGAGGTAGTAGGTTGTGTGGT 	6
----------------------GAGGTAGTAGGTTGTGTGGTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TGAGGTAGTAGGTTGTGTGGTT CTATACAACCTACTGCCTTCCC up 1 0


Secondary structure

TTCGGACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTTGTGTTTTTGCCCCATCAGGAGTTAACTATACAACCTACTGCCTTCCCTGAAGGGC
----------GTGAGGTAGTAGGTTGTGTGGTT 	14
----------GTGAGGTAGTAGGTTGTGTGGT 	15
-----------TGAGGTAGTAGGTTGTGTGGTTT 	2
-----------TGAGGTAGTAGGTTGTGTGGTT 	54
-----------TGAGGTAGTAGGTTGTGTGG 	1
-----------TGAGGTAGTAGGTTGTGTGGT 	6
------------GAGGTAGTAGGTTGTGTGGTT 	1


Overlaps with: MNEST034171
Overlaps with miRBase pre-miRNAs: dre-let-7b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540643 TGAGGTAGTAGGTTGTGTGGTT CTATACAACCTACTGCCTTCCC up 1 0


Secondary structure

GTGGCTGATGTTCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTAGTGATTTTGCCCCATCAGGAGTTAACTATACAACCTACTGCCTTCCCTGAAGGGCAGCGAAACAG
--------------------GTGAGGTAGTAGGTTGTGTGGTTT 	1
--------------------GTGAGGTAGTAGGTTGTGTGGTT 	49
--------------------GTGAGGTAGTAGGTTGTGTGGT 	18
--------------------GTGAGGTAGTAGGTTGTGTGG 	1
--------------------GTGAGGTAGTAGGTTGTGT 	1
---------------------TGAGGTAGTAGGTTGTGTGGTT 	99
---------------------TGAGGTAGTAGGTTGTGTGGTTT 	5
---------------------TGAGGTAGTAGGTTGTGTGGT 	9



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 TGAGGTAGTAGGTTGTGTGGTT CTATACAACCTACTGCCTTCCC up 1 0


Secondary structure

TTCGGACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTTGTGTTTTTGCCCCATCAGGAGTTAACTATACAACCTACTGCCTTCCCTGAAGGGC
----------GTGAGGTAGTAGGTTGTGTGGTTT 	1
----------GTGAGGTAGTAGGTTGTGTGGTT 	49
----------GTGAGGTAGTAGGTTGTGTGGT 	18
----------GTGAGGTAGTAGGTTGTGTGG 	1
----------GTGAGGTAGTAGGTTGTGT 	1
-----------TGAGGTAGTAGGTTGTGTGGTT 	99
-----------TGAGGTAGTAGGTTGTGTGGTTT 	5
-----------TGAGGTAGTAGGTTGTGTGGT 	9


Overlaps with: MNEST034171
Overlaps with miRBase pre-miRNAs: dre-let-7b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 TGAGGTAGTAGGTTGTGTGGTT CTATACAACCTACTGCCTTCCC up 1 0


Secondary structure

GTGGCTGATGTTCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTAGTGATTTTGCCCCATCAGGAGTTAACTATACAACCTACTGCCTTCCCTGAAGGGCAGCGAAACAG
--------------------GTGAGGTAGTAGGTTGTGTGGTT 	215
--------------------GTGAGGTAGTAGGTTGTGTGGTTT 	8
--------------------GTGAGGTAGTAGGTTGTGTGGT 	136
--------------------GTGAGGTAGTAGGTTGTGTGG 	7
---------------------TGAGGTAGTAGGTTGTGTG 	1
---------------------TGAGGTAGTAGGTTGTGTGGTTT 	38
---------------------TGAGGTAGTAGGTTGTGTGGTT 	587
---------------------TGAGGTAGTAGGTTGTGTGG 	1
---------------------TGAGGTAGTAGGTTGTGTGGT 	47
------------------------GGTAGTAGGTTGTGTGGTT 	1
----------------------------------------------------------------------------CTATACAACCTACTGCCTTCCC 	7
----------------------------------------------------------------------------CTATACAACCTACTGCCTTCC 	3
-----------------------------------------------------------------------------TATACAACCTACTGCCTTCCCT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540646 TGAGGTAGTAGGTTGTGTGGTT CTATACAACCTACTGCCTTCCC up 1 0


Secondary structure

TTCGGACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTTGTGTTTTTGCCCCATCAGGAGTTAACTATACAACCTACTGCCTTCCCTGAAGGGC
----------GTGAGGTAGTAGGTTGTGTGGTT 	215
----------GTGAGGTAGTAGGTTGTGTGGTTT 	8
----------GTGAGGTAGTAGGTTGTGTGGT 	136
----------GTGAGGTAGTAGGTTGTGTGG 	7
-----------TGAGGTAGTAGGTTGTGTG 	1
-----------TGAGGTAGTAGGTTGTGTGGTTT 	38
-----------TGAGGTAGTAGGTTGTGTGGTT 	587
-----------TGAGGTAGTAGGTTGTGTGG 	1
-----------TGAGGTAGTAGGTTGTGTGGT 	47
--------------GGTAGTAGGTTGTGTGGTT 	1
-------------------TAGGTTGTGTGGTTTCAGGGTTG 	1
------------------------------------------------------------------CTATACAACCTACTGCCTTCCC 	7
------------------------------------------------------------------CTATACAACCTACTGCCTTCC 	3
-------------------------------------------------------------------TATACAACCTACTGCCTTCCCT 	1


Overlaps with: MNEST034171
Overlaps with miRBase pre-miRNAs: dre-let-7b
HuntMi prediction: true miRNA