miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAGTTTGTACAGTT

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TGAGGTAGTAGTTTGTACAGTT CTGTACAGGCCACTGCCTTGCC up 2 0


Secondary structure

TCCTTTTGCCTGATTCCAGGCTGAGGTAGTAGTTTGTACAGTTTGAGGGTCTATGATACCACCCGGTACAGGAGATAACTGTACAGGCCACTGCCTTGCCAGGAACAGTGCGCCAGCT
--------------------CTGAGGTAGTAGTTTGTACAG 	5
--------------------CTGAGGTAGTAGTTTGTAC 	5
--------------------CTGAGGTAGTAGTTTGTACAGT 	103
--------------------CTGAGGTAGTAGTTTGTACA 	6
--------------------CTGAGGTAGTAGTTTGTACAGTT 	193
--------------------CTGAGGTAGTAGTTTGTACAGTTT 	17
---------------------TGAGGTAGTAGTTTGTACAGTTT 	9711
---------------------TGAGGTAGTAGTTTGTACAGT 	11709
---------------------TGAGGTAGTAGTTTGTACAG 	655
---------------------TGAGGTAGTAGTTTGTACA 	300
---------------------TGAGGTAGTAGTTTGTACAGTTTG 	1
---------------------TGAGGTAGTAGTTTGTACAGTT 	36315
----------------------GAGGTAGTAGTTTGTACAG 	12
----------------------GAGGTAGTAGTTTGTACAGTT 	331
----------------------GAGGTAGTAGTTTGTACAGT 	95
----------------------GAGGTAGTAGTTTGTACAGTTT 	89
-----------------------AGGTAGTAGTTTGTACAGTT 	4
-----------------------AGGTAGTAGTTTGTACAGT 	2
------------------------GGTAGTAGTTTGTACAGTTT 	1
------------------------GGTAGTAGTTTGTACAGTT 	45
-------------------------GTAGTAGTTTGTACAGTTT 	10
------------------------------------------------------------------------------CTGTACAGGCCACTGCCTTG 	1


Overlaps with: MNEST026935 MNEST031761
Overlaps with miRBase pre-miRNAs: hsa-let-7g ptr-let-7g gga-let-7g ssc-let-7g mdo-let-7g mmu-let-7g bta-let-7g mml-let-7g cfa-let-7g ppy-let-7g eca-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TGAGGTAGTAGTTTGTACAGTT CTGTACAGGCCACTGCCTTGCC up 2 0


Secondary structure

TCCTTTTGCCTGATTCCAGGCTGAGGTAGTAGTTTGTACAGTTTGAGGGTCTATGATACCACCCGGTACAGGAGATAACTGTACAGGCCACTGCCTTGCCAGGAACAGTGCGCCAGCT
--------------------CTGAGGTAGTAGTTTGTACAG 	4
--------------------CTGAGGTAGTAGTTTGTAC 	3
--------------------CTGAGGTAGTAGTTTGTACAGT 	105
--------------------CTGAGGTAGTAGTTTGTACA 	6
--------------------CTGAGGTAGTAGTTTGTACAGTT 	227
--------------------CTGAGGTAGTAGTTTGTACAGTTT 	31
---------------------TGAGGTAGTAGTTTGTACAGTTT 	10217
---------------------TGAGGTAGTAGTTTGTACAGT 	10466
---------------------TGAGGTAGTAGTTTGTACAGTTTG 	1
---------------------TGAGGTAGTAGTTTGTACAG 	424
---------------------TGAGGTAGTAGTTTGTACA 	176
---------------------TGAGGTAGTAGTTTGTACAGTT 	35292
----------------------GAGGTAGTAGTTTGTACAG 	10
----------------------GAGGTAGTAGTTTGTACAGTT 	404
----------------------GAGGTAGTAGTTTGTACAGTTT 	88
----------------------GAGGTAGTAGTTTGTACAGT 	137
-----------------------AGGTAGTAGTTTGTACAGTT 	4
-----------------------AGGTAGTAGTTTGTACAGTTT 	1
-----------------------AGGTAGTAGTTTGTACAGT 	2
------------------------GGTAGTAGTTTGTACAGTT 	20
-------------------------GTAGTAGTTTGTACAGTTT 	5
------------------------------------------------------------------------------CTGTACAGGCCACTGCCTTGC 	1


Overlaps with: MNEST026935 MNEST031761
Overlaps with miRBase pre-miRNAs: hsa-let-7g ptr-let-7g gga-let-7g ssc-let-7g mdo-let-7g mmu-let-7g bta-let-7g mml-let-7g cfa-let-7g ppy-let-7g eca-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TGAGGTAGTAGTTTGTACAGTT CTGTACAGGCCACTGCCTTGCC up 2 0


Secondary structure

TCCTTTTGCCTGATTCCAGGCTGAGGTAGTAGTTTGTACAGTTTGAGGGTCTATGATACCACCCGGTACAGGAGATAACTGTACAGGCCACTGCCTTGCCAGGAACAGTGCGCCAGCT
--------------------CTGAGGTAGTAGTTTGTACA 	2
--------------------CTGAGGTAGTAGTTTGTACAGTTT 	6
--------------------CTGAGGTAGTAGTTTGTACAGTT 	70
--------------------CTGAGGTAGTAGTTTGTACAGT 	32
--------------------CTGAGGTAGTAGTTTGTAC 	4
---------------------TGAGGTAGTAGTTTGTACAGTTT 	1488
---------------------TGAGGTAGTAGTTTGTACAGTT 	15166
---------------------TGAGGTAGTAGTTTGTACAGT 	3763
---------------------TGAGGTAGTAGTTTGTACAG 	235
---------------------TGAGGTAGTAGTTTGTACA 	101
----------------------GAGGTAGTAGTTTGTACAG 	2
----------------------GAGGTAGTAGTTTGTACAGTTT 	11
----------------------GAGGTAGTAGTTTGTACAGTT 	116
----------------------GAGGTAGTAGTTTGTACAGT 	38
-----------------------AGGTAGTAGTTTGTACAGTTT 	1
------------------------GGTAGTAGTTTGTACAGTT 	10
-----------------------------------------------------------------------------ACTGTACAGGCCACTGCCTTGC 	1


Overlaps with: MNEST026935 MNEST031761
Overlaps with miRBase pre-miRNAs: hsa-let-7g ptr-let-7g gga-let-7g ssc-let-7g mdo-let-7g mmu-let-7g bta-let-7g mml-let-7g cfa-let-7g ppy-let-7g eca-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TGAGGTAGTAGTTTGTACAGTT CTGTACAGGCCACTGCCTTGCC up 2 0


Secondary structure

TCCTTTTGCCTGATTCCAGGCTGAGGTAGTAGTTTGTACAGTTTGAGGGTCTATGATACCACCCGGTACAGGAGATAACTGTACAGGCCACTGCCTTGCCAGGAACAGTGCGCCAGCT
--------------------CTGAGGTAGTAGTTTGTACAGT 	144
--------------------CTGAGGTAGTAGTTTGTACAG 	4
--------------------CTGAGGTAGTAGTTTGTAC 	3
--------------------CTGAGGTAGTAGTTTGTACA 	5
--------------------CTGAGGTAGTAGTTTGTACAGTT 	640
--------------------CTGAGGTAGTAGTTTGTACAGTTT 	36
---------------------TGAGGTAGTAGTTTGTACAGTTT 	3264
---------------------TGAGGTAGTAGTTTGTACAGT 	10120
---------------------TGAGGTAGTAGTTTGTACAG 	410
---------------------TGAGGTAGTAGTTTGTACAGTTTG 	1
---------------------TGAGGTAGTAGTTTGTACA 	147
---------------------TGAGGTAGTAGTTTGTACAGTT 	56374
----------------------GAGGTAGTAGTTTGTACAGTT 	862
----------------------GAGGTAGTAGTTTGTACAG 	6
----------------------GAGGTAGTAGTTTGTACAGTTT 	57
----------------------GAGGTAGTAGTTTGTACAGT 	158
-----------------------AGGTAGTAGTTTGTACAGTT 	15
-----------------------AGGTAGTAGTTTGTACAGT 	4
------------------------GGTAGTAGTTTGTACAGTTT 	1
------------------------GGTAGTAGTTTGTACAGTT 	95
-------------------------GTAGTAGTTTGTACAGTTT 	4
--------------------------TAGTAGTTTGTACAGTTTGAGGGT 	1
----------------------------GTAGTTTGTACAGTTTGAGGGT 	1
-----------------------------------------------------------------------------ACTGTACAGGCCACTGCCTTGC 	1
------------------------------------------------------------------------------CTGTACAGGCCACTGCCTTGCC 	1
------------------------------------------------------------------------------CTGTACAGGCCACTGCCTTGC 	5
------------------------------------------------------------------------------CTGTACAGGCCACTGCCTTG 	1
------------------------------------------------------------------------------CTGTACAGGCCACTGCCTTGCCA 	1


Overlaps with: MNEST026935 MNEST031761
Overlaps with miRBase pre-miRNAs: hsa-let-7g ptr-let-7g gga-let-7g ssc-let-7g mdo-let-7g mmu-let-7g bta-let-7g mml-let-7g cfa-let-7g ppy-let-7g eca-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TGAGGTAGTAGTTTGTACAGTT CTGTACAGGCCACTGCCTTGCC up 2 0


Secondary structure

TCCTTTTGCCTGATTCCAGGCTGAGGTAGTAGTTTGTACAGTTTGAGGGTCTATGATACCACCCGGTACAGGAGATAACTGTACAGGCCACTGCCTTGCCAGGAACAGTGCGCCAGCT
--------------------CTGAGGTAGTAGTTTGTACAGTTT 	5
--------------------CTGAGGTAGTAGTTTGTACAGTT 	66
--------------------CTGAGGTAGTAGTTTGTACAGT 	29
--------------------CTGAGGTAGTAGTTTGTAC 	2
---------------------TGAGGTAGTAGTTTGTACAGTTT 	1370
---------------------TGAGGTAGTAGTTTGTACAGTT 	14783
---------------------TGAGGTAGTAGTTTGTACAGT 	3899
---------------------TGAGGTAGTAGTTTGTACAG 	186
---------------------TGAGGTAGTAGTTTGTACA 	89
----------------------GAGGTAGTAGTTTGTACAG 	1
----------------------GAGGTAGTAGTTTGTACAGTTT 	19
----------------------GAGGTAGTAGTTTGTACAGTT 	143
----------------------GAGGTAGTAGTTTGTACAGT 	43
------------------------GGTAGTAGTTTGTACAGTT 	14
-------------------------GTAGTAGTTTGTACAGTTT 	3


Overlaps with: MNEST026935 MNEST031761
Overlaps with miRBase pre-miRNAs: hsa-let-7g ptr-let-7g gga-let-7g ssc-let-7g mdo-let-7g mmu-let-7g bta-let-7g mml-let-7g cfa-let-7g ppy-let-7g eca-let-7g
HuntMi prediction: true miRNA