miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTAGTTTGTATAGTT

selected species: Danio rerio



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TGAGGTAGTAGTTTGTATAGTT CTATACAGTCTACTGTCTTTCC up 2 0


Secondary structure

GCTCTGCTGTGGACTGTGGGATGAGGTAGTAGTTTGTATAGTTTTAGGATCACACCAGATCTGGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTTACCGCTTCGAC
---------------------TGAGGTAGTAGTTTGTATAGTT 	16
---------------------TGAGGTAGTAGTTTGTATAG 	1
------------------------------------------------------------------GATAACTATACAGTCTACTGTCTT 	1

Overlaps with: MNEST034180
Overlaps with miRBase pre-miRNAs: tni-let-7g dre-let-7g-2 fru-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540644 TGAGGTAGTAGTTTGTATAGTT CTATACAGCCTACTGTCTTTCT up 2 0


Secondary structure

CAGGCATTGGGGGCTGTGGAATGAGGTAGTAGTTTGTATAGTTTGGGATCACACCAGATCTGGGAGATAACTATACAGCCTACTGTCTTTCTCACAGCTGCTCCTTCACA
---------------------TGAGGTAGTAGTTTGTATAGTT 	16
---------------------TGAGGTAGTAGTTTGTATAG 	1

Overlaps with: MNEST034179
Overlaps with miRBase pre-miRNAs: dre-let-7g-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540645 TGAGGTAGTAGTTTGTATAGTT CTATACAGTCTACTGTCTTTCC up 2 0


Secondary structure

GCTCTGCTGTGGACTGTGGGATGAGGTAGTAGTTTGTATAGTTTTAGGATCACACCAGATCTGGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTTACCGCTTCGAC
---------------------TGAGGTAGTAGTTTGTATAGTTT 	3
---------------------TGAGGTAGTAGTTTGTATAGTT 	400
---------------------TGAGGTAGTAGTTTGTATAGT 	8
---------------------TGAGGTAGTAGTTTGTATAG 	5
------------------------GGTAGTAGTTTGTATAGTT 	2
-------------------------------------------TTAGGATCACACCAGATCTGGG 	1

Overlaps with: MNEST034180
Overlaps with miRBase pre-miRNAs: tni-let-7g dre-let-7g-2 fru-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540645 TGAGGTAGTAGTTTGTATAGTT CTATACAGCCTACTGTCTTTCT up 2 0


Secondary structure

CAGGCATTGGGGGCTGTGGAATGAGGTAGTAGTTTGTATAGTTTGGGATCACACCAGATCTGGGAGATAACTATACAGCCTACTGTCTTTCTCACAGCTGCTCCTTCACA
---------------------TGAGGTAGTAGTTTGTATAGTTT 	3
---------------------TGAGGTAGTAGTTTGTATAGTT 	400
---------------------TGAGGTAGTAGTTTGTATAGT 	8
---------------------TGAGGTAGTAGTTTGTATAG 	5
------------------------GGTAGTAGTTTGTATAGTT 	2

Overlaps with: MNEST034179
Overlaps with miRBase pre-miRNAs: dre-let-7g-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540642 TGAGGTAGTAGTTTGTATAGTT CTATACAGTCTACTGTCTTTCC up 2 0


Secondary structure

GCTCTGCTGTGGACTGTGGGATGAGGTAGTAGTTTGTATAGTTTTAGGATCACACCAGATCTGGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTTACCGCTTCGAC
---------------------TGAGGTAGTAGTTTGTATAGTTT 	1
---------------------TGAGGTAGTAGTTTGTATAGTT 	53
---------------------TGAGGTAGTAGTTTGTATAGT 	5

Overlaps with: MNEST034180
Overlaps with miRBase pre-miRNAs: tni-let-7g dre-let-7g-2 fru-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540642 TGAGGTAGTAGTTTGTATAGTT CTATACAGCCTACTGTCTTTCT up 2 0


Secondary structure

CAGGCATTGGGGGCTGTGGAATGAGGTAGTAGTTTGTATAGTTTGGGATCACACCAGATCTGGGAGATAACTATACAGCCTACTGTCTTTCTCACAGCTGCTCCTTCACA
---------------------TGAGGTAGTAGTTTGTATAGTTT 	1
---------------------TGAGGTAGTAGTTTGTATAGTT 	53
---------------------TGAGGTAGTAGTTTGTATAGT 	5

Overlaps with: MNEST034179
Overlaps with miRBase pre-miRNAs: dre-let-7g-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Danio rerio GSM540643 TGAGGTAGTAGTTTGTATAGTT CTATACAGTCTACTGTCTTTCC up 2 0


Secondary structure

GCTCTGCTGTGGACTGTGGGATGAGGTAGTAGTTTGTATAGTTTTAGGATCACACCAGATCTGGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTTACCGCTTCGAC
---------------------TGAGGTAGTAGTTTGTATAGTTT 	3
---------------------TGAGGTAGTAGTTTGTATAGT 	6
---------------------TGAGGTAGTAGTTTGTATAGTT 	295

Overlaps with: MNEST034180
Overlaps with miRBase pre-miRNAs: tni-let-7g dre-let-7g-2 fru-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Danio rerio GSM540643 TGAGGTAGTAGTTTGTATAGTT CTATACAGCCTACTGTCTTTCT up 2 0


Secondary structure

CAGGCATTGGGGGCTGTGGAATGAGGTAGTAGTTTGTATAGTTTGGGATCACACCAGATCTGGGAGATAACTATACAGCCTACTGTCTTTCTCACAGCTGCTCCTTCACA
---------------------TGAGGTAGTAGTTTGTATAGTTT 	3
---------------------TGAGGTAGTAGTTTGTATAGT 	6
---------------------TGAGGTAGTAGTTTGTATAGTT 	295

Overlaps with: MNEST034179
Overlaps with miRBase pre-miRNAs: dre-let-7g-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Danio rerio GSM540646 TGAGGTAGTAGTTTGTATAGTT CTATACAGTCTACTGTCTTTCC up 2 0


Secondary structure

GCTCTGCTGTGGACTGTGGGATGAGGTAGTAGTTTGTATAGTTTTAGGATCACACCAGATCTGGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTTACCGCTTCGAC
---------------------TGAGGTAGTAGTTTGTATAGTTTT 	12
---------------------TGAGGTAGTAGTTTGTATAGTTT 	40
---------------------TGAGGTAGTAGTTTGTATAGTT 	3101
---------------------TGAGGTAGTAGTTTGTATAGT 	52
---------------------TGAGGTAGTAGTTTGTATA 	1
---------------------TGAGGTAGTAGTTTGTATAG 	9
----------------------GAGGTAGTAGTTTGTATAGTT 	6
------------------------GGTAGTAGTTTGTATAGTT 	5
-------------------------------------------TTAGGATCACACCAGATCTGGGA 	1
-------------------------------------------TTAGGATCACACCAGATCTGGGAGA 	1
-------------------------------------------TTAGGATCACACCAGATCTGGGAG 	1
---------------------------------------------------------------GGAGATAACTATACAGTCTACT 	1

Overlaps with: MNEST034180
Overlaps with miRBase pre-miRNAs: tni-let-7g dre-let-7g-2 fru-let-7g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Danio rerio GSM540646 TGAGGTAGTAGTTTGTATAGTT CTATACAGCCTACTGTCTTTCT up 2 0


Secondary structure

CAGGCATTGGGGGCTGTGGAATGAGGTAGTAGTTTGTATAGTTTGGGATCACACCAGATCTGGGAGATAACTATACAGCCTACTGTCTTTCTCACAGCTGCTCCTTCACA
---------------------TGAGGTAGTAGTTTGTATAGTTT 	40
---------------------TGAGGTAGTAGTTTGTATAGTT 	3101
---------------------TGAGGTAGTAGTTTGTATAGT 	52
---------------------TGAGGTAGTAGTTTGTATA 	1
---------------------TGAGGTAGTAGTTTGTATAG 	9
----------------------GAGGTAGTAGTTTGTATAGTT 	6
------------------------GGTAGTAGTTTGTATAGTT 	5
----------------------------------------------------------------------CTATACAGCCTACTGTCTTTCT 	1

Overlaps with: MNEST034179
Overlaps with miRBase pre-miRNAs: dre-let-7g-1
HuntMi prediction: true miRNA