miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTTGGTTGTATAGT

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TGAGGTAGTTGGTTGTATAGT TATACAATCGGCTAACTTTACT up 0 1


Secondary structure

GGATATCTACGCTGACAAGAGTGAGGTAGTTGGTTGTATAGTAGTTTATTATTTGACTTTACTATACAATCGGCTAACTTTACTTCTGTCTGGCTAAAATGT
---------------------TGAGGTAGTTGGTTGTATAGTA 	79
---------------------TGAGGTAGTTGGTTGTATAGT 	205
---------------------TGAGGTAGTTGGTTGTATAG 	65
---------------------TGAGGTAGTTGGTTGTATA 	5
----------------------GAGGTAGTTGGTTGTATAGTA 	1
----------------------GAGGTAGTTGGTTGTATAGT 	1
-------------------------------------------------------------CTATACAATCGGCTAACTTTACTT 	24
-------------------------------------------------------------CTATACAATCGGCTAACTTTACT 	55
-------------------------------------------------------------CTATACAATCGGCTAACTTTA 	1
--------------------------------------------------------------TATACAATCGGCTAACTTTACTT 	2
--------------------------------------------------------------TATACAATCGGCTAACTTTACT 	1
--------------------------------------------------------------TATACAATCGGCTAACTTTAC 	1

Overlaps with: MNEST035041
Overlaps with miRBase pre-miRNAs: api-let-7
HuntMi prediction: true miRNA