miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

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selected mature miRNA sequence: TGAGGTAGTTGGTTGTATGGTT

selected species: Danio rerio

8 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540645	TGAGGTAGTTGGTTGTATGGTT	CTGTACAACCTTCTAGCTTTCC	up	4	0

Secondary structure

CCCCTCATGTGCGTTGCGGTGTGAGGTAGTTGGTTGTATGGTTTTGCATAATAAACAGCCCGGAGTTAACTGTACAACCTTCTAGCTTTCCCTGCGGCTGCACGATTAC
---------------------TGAGGTAGTTGGTTGTATGGTTT 	2
---------------------TGAGGTAGTTGGTTGTATGGTT 	1779
---------------------TGAGGTAGTTGGTTGTATGGT 	28
---------------------TGAGGTAGTTGGTTGTATGG 	3
---------------------TGAGGTAGTTGGTTGTATG 	1
----------------------GAGGTAGTTGGTTGTATGGTT 	4
------------------------GGTAGTTGGTTGTATGGTT 	1
----------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	2
-----------------------------------------------------------------TTAACTGTACAACCTTCTAGC 	2
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	12
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTC 	2

Overlaps with: MNEST034174
Overlaps with miRBase pre-miRNAs: dre-let-7d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540645	TGAGGTAGTTGGTTGTATGGTT	CTGTACAACCTTCTAGCTTTCC	up	4	0

Secondary structure

TGGAGTCTGTGCGCTGCAGGCTGAGGTAGTTGGTTGTATGGTTTTGCATCATAATCAGCCTGGAGTTAACTGTACAACCTTCTAGCTTTCCCTGCGGTGTCACCATTAC
--------------------CTGAGGTAGTTGGTTGTATGGTT 	4
---------------------TGAGGTAGTTGGTTGTATGGTTT 	2
---------------------TGAGGTAGTTGGTTGTATGGTT 	1779
---------------------TGAGGTAGTTGGTTGTATGGT 	28
---------------------TGAGGTAGTTGGTTGTATGG 	3
---------------------TGAGGTAGTTGGTTGTATG 	1
----------------------GAGGTAGTTGGTTGTATGGTT 	4
------------------------GGTAGTTGGTTGTATGGTT 	1
----------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	2
-----------------------------------------------------------------TTAACTGTACAACCTTCTAGC 	2
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	12
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTC 	2

Overlaps with: MNEST034175
Overlaps with miRBase pre-miRNAs: dre-let-7d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540642	TGAGGTAGTTGGTTGTATGGTT	CTGTACAACCTTCTAGCTTTCC	up	4	0

Secondary structure

CCCCTCATGTGCGTTGCGGTGTGAGGTAGTTGGTTGTATGGTTTTGCATAATAAACAGCCCGGAGTTAACTGTACAACCTTCTAGCTTTCCCTGCGGCTGCACGATTAC
---------------------TGAGGTAGTTGGTTGTATGGTTTT 	1
---------------------TGAGGTAGTTGGTTGTATGGTT 	32
---------------------TGAGGTAGTTGGTTGTATGGT 	3
-------------------------------------------------------------------AACTGTACAACCTTCTAGCTTTCC 	1

Overlaps with: MNEST034174
Overlaps with miRBase pre-miRNAs: dre-let-7d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Danio rerio	GSM540642	TGAGGTAGTTGGTTGTATGGTT	CTGTACAACCTTCTAGCTTTCC	up	4	0

Secondary structure

TGGAGTCTGTGCGCTGCAGGCTGAGGTAGTTGGTTGTATGGTTTTGCATCATAATCAGCCTGGAGTTAACTGTACAACCTTCTAGCTTTCCCTGCGGTGTCACCATTAC
---------------------TGAGGTAGTTGGTTGTATGGTTTT 	1
---------------------TGAGGTAGTTGGTTGTATGGTT 	32
---------------------TGAGGTAGTTGGTTGTATGGT 	3
-------------------------------------------------------------------AACTGTACAACCTTCTAGCTTTCC 	1

Overlaps with: MNEST034175
Overlaps with miRBase pre-miRNAs: dre-let-7d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Danio rerio	GSM540643	TGAGGTAGTTGGTTGTATGGTT	CTGTACAACCTTCTAGCTTTCC	up	4	0

Secondary structure

CCCCTCATGTGCGTTGCGGTGTGAGGTAGTTGGTTGTATGGTTTTGCATAATAAACAGCCCGGAGTTAACTGTACAACCTTCTAGCTTTCCCTGCGGCTGCACGATTAC
---------------------TGAGGTAGTTGGTTGTATGGTTT 	2
---------------------TGAGGTAGTTGGTTGTATGGTT 	1504
---------------------TGAGGTAGTTGGTTGTATGGT 	24
---------------------TGAGGTAGTTGGTTGTATGG 	1
---------------------TGAGGTAGTTGGTTGTATGGTTTT 	1
-----------------------AGGTAGTTGGTTGTATGGTT 	1
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	1

Overlaps with: MNEST034174
Overlaps with miRBase pre-miRNAs: dre-let-7d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Danio rerio	GSM540643	TGAGGTAGTTGGTTGTATGGTT	CTGTACAACCTTCTAGCTTTCC	up	4	0

Secondary structure

TGGAGTCTGTGCGCTGCAGGCTGAGGTAGTTGGTTGTATGGTTTTGCATCATAATCAGCCTGGAGTTAACTGTACAACCTTCTAGCTTTCCCTGCGGTGTCACCATTAC
--------------------CTGAGGTAGTTGGTTGTATGGTT 	3
---------------------TGAGGTAGTTGGTTGTATGGTTT 	2
---------------------TGAGGTAGTTGGTTGTATGGTT 	1504
---------------------TGAGGTAGTTGGTTGTATGGT 	24
---------------------TGAGGTAGTTGGTTGTATGG 	1
---------------------TGAGGTAGTTGGTTGTATGGTTTT 	1
-----------------------AGGTAGTTGGTTGTATGGTT 	1
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	1

Overlaps with: MNEST034175
Overlaps with miRBase pre-miRNAs: dre-let-7d-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Danio rerio	GSM540646	TGAGGTAGTTGGTTGTATGGTT	CTGTACAACCTTCTAGCTTTCC	up	4	0

Secondary structure

CCCCTCATGTGCGTTGCGGTGTGAGGTAGTTGGTTGTATGGTTTTGCATAATAAACAGCCCGGAGTTAACTGTACAACCTTCTAGCTTTCCCTGCGGCTGCACGATTAC
---------------------TGAGGTAGTTGGTTGTATGGTTT 	122
---------------------TGAGGTAGTTGGTTGTATG 	2
---------------------TGAGGTAGTTGGTTGTATGGTTTT 	5
---------------------TGAGGTAGTTGGTTGTATGG 	7
---------------------TGAGGTAGTTGGTTGTATGGTT 	19578
---------------------TGAGGTAGTTGGTTGTATGGT 	247
----------------------GAGGTAGTTGGTTGTATGGTT 	28
------------------------GGTAGTTGGTTGTATGGTT 	3
-------------------------------------------TTGCATAATAAACAGCCCGGAGT 	1
--------------------------------------------------------------GAGTTAACTGTACAACCTTCT 	1
---------------------------------------------------------------AGTTAACTGTACAACCTTCTAGC 	1
----------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	63
-----------------------------------------------------------------TTAACTGTACAACCTTCTAGC 	2
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	83
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTT 	1
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTC 	12

Overlaps with: MNEST034174
Overlaps with miRBase pre-miRNAs: dre-let-7d-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Danio rerio	GSM540646	TGAGGTAGTTGGTTGTATGGTT	CTGTACAACCTTCTAGCTTTCC	up	4	0

Secondary structure

TGGAGTCTGTGCGCTGCAGGCTGAGGTAGTTGGTTGTATGGTTTTGCATCATAATCAGCCTGGAGTTAACTGTACAACCTTCTAGCTTTCCCTGCGGTGTCACCATTAC
--------------------CTGAGGTAGTTGGTTGTATGGTT 	2
---------------------TGAGGTAGTTGGTTGTATGGTTT 	122
---------------------TGAGGTAGTTGGTTGTATG 	2
---------------------TGAGGTAGTTGGTTGTATGGTTTT 	5
---------------------TGAGGTAGTTGGTTGTATGG 	7
---------------------TGAGGTAGTTGGTTGTATGGTT 	19578
---------------------TGAGGTAGTTGGTTGTATGGT 	247
----------------------GAGGTAGTTGGTTGTATGGTT 	28
------------------------GGTAGTTGGTTGTATGGTT 	3
--------------------------TAGTTGGTTGTATGGTTTTGCATC 	2
-----------------------------TTGGTTGTATGGTTTTGCATCAT 	1
-------------------------------------------TTGCATCATAATCAGCCTGGAGTT 	2
--------------------------------------------------------------GAGTTAACTGTACAACCTTCT 	1
---------------------------------------------------------------AGTTAACTGTACAACCTTCTAGC 	1
----------------------------------------------------------------GTTAACTGTACAACCTTCTAGC 	63
-----------------------------------------------------------------TTAACTGTACAACCTTCTAGC 	2
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTCC 	83
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTT 	1
---------------------------------------------------------------------CTGTACAACCTTCTAGCTTTC 	12

Overlaps with: MNEST034175
Overlaps with miRBase pre-miRNAs: dre-let-7d-2
HuntMi prediction: true miRNA