miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTTGGTTGTATTGTT

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343284-14444 TGAGGTAGTTGGTTGTATTGTT CTATACAGCCCGCTAGCTTAAC up 3 0


Secondary structure

CATTTGTCAGCTATTCGTGGCTGAGGTAGTTGGTTGTATTGTTTCCCTTGTGTAATGTTAACTATACAGCCCGCTAGCTTAACCATGGTTGCTAACTATCC
---------------------TGAGGTAGTTGGTTGTATTGTTT 	8
---------------------TGAGGTAGTTGGTTGTATTGTT 	126
---------------------TGAGGTAGTTGGTTGTATTGT 	33
---------------------TGAGGTAGTTGGTTGTATTG 	11
---------------------TGAGGTAGTTGGTTGTATT 	3
-------------------------------------------------------------CTATACAGCCCGCTAGCTTA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343285 TGAGGTAGTTGGTTGTATTGTT CTATACAGCCCGCTAGCTTAAC up 3 0


Secondary structure

CATTTGTCAGCTATTCGTGGCTGAGGTAGTTGGTTGTATTGTTTCCCTTGTGTAATGTTAACTATACAGCCCGCTAGCTTAACCATGGTTGCTAACTATCC
--------------------CTGAGGTAGTTGGTTGTATTGTT 	12
--------------------CTGAGGTAGTTGGTTGTATTGT 	9
--------------------CTGAGGTAGTTGGTTGTATT 	1
--------------------CTGAGGTAGTTGGTTGTAT 	1
---------------------TGAGGTAGTTGGTTGTATTGTTT 	3830
---------------------TGAGGTAGTTGGTTGTATTGTT 	21498
---------------------TGAGGTAGTTGGTTGTATTGT 	1742
---------------------TGAGGTAGTTGGTTGTATTG 	2093
---------------------TGAGGTAGTTGGTTGTATT 	186
----------------------GAGGTAGTTGGTTGTATTGTTT 	4
----------------------GAGGTAGTTGGTTGTATTGTT 	3
----------------------GAGGTAGTTGGTTGTATTGT 	1
-------------------------------------------------------------CTATACAGCCCGCTAGCTTA 	1
-------------------------------------------------------------CTATACAGCCCGCTAGCTT 	7



HuntMi prediction: true miRNA