miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTAGTTGTTTGTACAGTT

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540643 TGAGGTAGTTGTTTGTACAGTT CTGTACAGACTACTGCCTTGCC up 2 0


Secondary structure

CTGTTCTGGGTTGAGGTAGTTGTTTGTACAGTTTTTAGGGTCTGTTATTCTGCCCTGTTAAGGAGCTAACTGTACAGACTACTGCCTTGCCCAGGGTTG
-----------TGAGGTAGTTGTTTGTACAGTT 	22
------------GAGGTAGTTGTTTGTACAGTT 	1

Overlaps with: MNEST034183
Overlaps with miRBase pre-miRNAs: dre-let-7j
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540646 TGAGGTAGTTGTTTGTACAGTT CTGTACAGACTACTGCCTTGCC up 2 0


Secondary structure

CTGTTCTGGGTTGAGGTAGTTGTTTGTACAGTTTTTAGGGTCTGTTATTCTGCCCTGTTAAGGAGCTAACTGTACAGACTACTGCCTTGCCCAGGGTTG
-----------TGAGGTAGTTGTTTGTACAGT 	1
-----------TGAGGTAGTTGTTTGTACAGTT 	16
-------------------------------------------------------------------AACTGTACAGACTACTGCCTTGC 	2
---------------------------------------------------------------------CTGTACAGACTACTGCCTTGC 	1

Overlaps with: MNEST034183
Overlaps with miRBase pre-miRNAs: dre-let-7j
HuntMi prediction: true miRNA