miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGGTATCTTAGTTAGACAGA

selected species: Caenorhabditis elegans



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGAGGTATCTTAGTTAGACAGA TGTTTAACTATTGTACATCACA down 3 0


Secondary structure

TTGGTAAAAGTCTGTTTAACTATTGTACATCACAATTTTCACTGCGAAAAATTGAGGTATCTTAGTTAGACAGACATATACTA
---------------------------------------------------TTGAGGTATCTTAGTTAGACAGA 	1
----------------------------------------------------TGAGGTATCTTAGTTAGACAGA 	18
----------------------------------------------------TGAGGTATCTTAGTTAGACAG 	1

Overlaps with: MNEST038397
Overlaps with miRBase pre-miRNAs: cel-mir-793
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TGAGGTATCTTAGTTAGACAGA TGTTTAACTATTGTACATCACA down 3 0


Secondary structure

TTGGTAAAAGTCTGTTTAACTATTGTACATCACAATTTTCACTGCGAAAAATTGAGGTATCTTAGTTAGACAGACATATACTA
---------------------------------------------------TTGAGGTATCTTAGTTAGACAGA 	1
----------------------------------------------------TGAGGTATCTTAGTTAGACAGA 	50

Overlaps with: MNEST038397
Overlaps with miRBase pre-miRNAs: cel-mir-793
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TGAGGTATCTTAGTTAGACAGA TGTTTAACTATTGTACATCACA down 3 0


Secondary structure

TTGGTAAAAGTCTGTTTAACTATTGTACATCACAATTTTCACTGCGAAAAATTGAGGTATCTTAGTTAGACAGACATATACTA
----------------------------------------------------TGAGGTATCTTAGTTAGACAGA 	20

Overlaps with: MNEST038397
Overlaps with miRBase pre-miRNAs: cel-mir-793
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM297751-9445 TGAGGTATCTTAGTTAGACAGA TGTTTAACTATTGTACATCACA down 3 0


Secondary structure

TTGGTAAAAGTCTGTTTAACTATTGTACATCACAATTTTCACTGCGAAAAATTGAGGTATCTTAGTTAGACAGACATATACTA
------------TGTTTAACTATTGTACATCACAAT 	2
----------------------------------------------------TGAGGTATCTTAGTTAGACAG 	4
----------------------------------------------------TGAGGTATCTTAGTTAGACAGA 	384
----------------------------------------------------TGAGGTATCTTAGTTAGACA 	6
----------------------------------------------------TGAGGTATCTTAGTTAGAC 	1
-----------------------------------------------------GAGGTATCTTAGTTAGACAGA 	1

Overlaps with: MNEST038397
Overlaps with miRBase pre-miRNAs: cel-mir-793
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297752-9446 TGAGGTATCTTAGTTAGACAGA TGTTTAACTATTGTACATCACA down 3 0


Secondary structure

TTGGTAAAAGTCTGTTTAACTATTGTACATCACAATTTTCACTGCGAAAAATTGAGGTATCTTAGTTAGACAGACATATACTA
----------------------------------------------------TGAGGTATCTTAGTTAGACA 	1
----------------------------------------------------TGAGGTATCTTAGTTAGACAGA 	430
----------------------------------------------------TGAGGTATCTTAGTTAGACAG 	4
------------------------------------------------------AGGTATCTTAGTTAGACAGA 	1

Overlaps with: MNEST038397
Overlaps with miRBase pre-miRNAs: cel-mir-793
HuntMi prediction: true miRNA