miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGAGGTCTTATAGTTAGGTAGA

selected species: Caenorhabditis elegans



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427332-5684 TGAGGTCTTATAGTTAGGTAGA TGCCCAACTTGCAGACTTTTCAAT down 4 2


Secondary structure

TTGGTACAAGTTTGCCCAACTTGCAGACTTTTCAATTTTCGGCAAGTGGAATTGAGGTCTTATAGTTAGGTAGACATTTACTA
------------TGCCCAACTTGCAGACTTTTCAAT 	1
---------------------------------------------------TTGAGGTCTTATAGTTAGGTAGA 	2
----------------------------------------------------TGAGGTCTTATAGTTAGGTAGA 	5

Overlaps with: MNEST038414
Overlaps with miRBase pre-miRNAs: cel-mir-1821
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427346-5695 TGAGGTCTTATAGTTAGGTAGA TGCCCAACTTGCAGACTTTTCAAT down 4 2


Secondary structure

TTGGTACAAGTTTGCCCAACTTGCAGACTTTTCAATTTTCGGCAAGTGGAATTGAGGTCTTATAGTTAGGTAGACATTTACTA
----------------------------------------------------TGAGGTCTTATAGTTAGGTAGA 	9

Overlaps with: MNEST038414
Overlaps with miRBase pre-miRNAs: cel-mir-1821
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM297751-9445 TGAGGTCTTATAGTTAGGTAGA TGCCCAACTTGCAGACTTTTCAAT down 4 2


Secondary structure

TTGGTACAAGTTTGCCCAACTTGCAGACTTTTCAATTTTCGGCAAGTGGAATTGAGGTCTTATAGTTAGGTAGACATTTACTA
----------------------------------------------------TGAGGTCTTATAGTTAGGTAG 	1
----------------------------------------------------TGAGGTCTTATAGTTAGGTAGA 	12

Overlaps with: MNEST038414
Overlaps with miRBase pre-miRNAs: cel-mir-1821
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM297752-9446 TGAGGTCTTATAGTTAGGTAGA TGCCCAACTTGCAGACTTTTCAAT down 4 2


Secondary structure

TTGGTACAAGTTTGCCCAACTTGCAGACTTTTCAATTTTCGGCAAGTGGAATTGAGGTCTTATAGTTAGGTAGACATTTACTA
----------------------------------------------------TGAGGTCTTATAGTTAGGTAGA 	14

Overlaps with: MNEST038414
Overlaps with miRBase pre-miRNAs: cel-mir-1821
HuntMi prediction: true miRNA