miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGAGTATTCCAGATTGCATAGC

selected species: Drosophila melanogaster

11 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
-----------------ATTCTGAGTATTCCAGATTGCA 	1
------------------TTCTGAGTATTCCAGATTGC 	1
---------------------TGAGTATTCCAGATTGCATAG 	78
---------------------TGAGTATTCCAGATTGCATAGC 	99
-----------------------------------------------------------TATACGGTCTGGGACACTTTTAA 	1
-----------------------------------------------------------TATACGGTCTGGGACACTTTTA 	7
-----------------------------------------------------------TATACGGTCTGGGACACTTT 	1
-----------------------------------------------------------TATACGGTCTGGGACACTTTT 	7
-------------------------------------------------------------TACGGTCTGGGACACTTTTAA 	5
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	33
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	20
-------------------------------------------------------------TACGGTCTGGGACACTTTTA 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTT 	1
---------------------------------------------------------------CGGTCTGGGACACTTTTAA 	1

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
---------------------TGAGTATTCCAGATTGCATAGC 	12
---------------------TGAGTATTCCAGATTGCATAG 	3
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAA 	1

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399105-16286	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
-ACGGGTTTTGTACCACATTC 	1
-----------------ATTCTGAGTATTCCAGATTGCA 	1
------------------TTCTGAGTATTCCAGATTGCAT 	2
------------------TTCTGAGTATTCCAGATTGCATA 	1
--------------------CTGAGTATTCCAGATTGCATAGC 	1
---------------------TGAGTATTCCAGATTGCATAG 	62
---------------------TGAGTATTCCAGATTGCATAGC 	336
---------------------TGAGTATTCCAGATTGCATA 	3
---------------------TGAGTATTCCAGATTGCATAGCT 	4
---------------------TGAGTATTCCAGATTGCAT 	1
----------------------GAGTATTCCAGATTGCATAGC 	1
-----------------------AGTATTCCAGATTGCATAGCTT 	1
-----------------------AGTATTCCAGATTGCATAGC 	1
---------------------------------------------------------GCTATACGGTCTGGGACACTTT 	1
-----------------------------------------------------------TATACGGTCTGGGACACTTTTA 	12
-----------------------------------------------------------TATACGGTCTGGGACACTTTT 	4
-------------------------------------------------------------TACGGTCTGGGACACTTTTAA 	6
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	15
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	33
-------------------------------------------------------------TACGGTCTGGGACACTTTTA 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTT 	1
--------------------------------------------------------------ACGGTCTGGGACACTTTTAA 	1
--------------------------------------------------------------ACGGTCTGGGACACTTTTAACA 	1

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM360262-14327	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
---------------------TGAGTATTCCAGATTGCATAG 	11
---------------------TGAGTATTCCAGATTGCATAGC 	25
-----------------------------------------------------------TATACGGTCTGGGACACTTTTA 	2
-----------------------------------------------------------TATACGGTCTGGGACACTTTT 	3
-------------------------------------------------------------TACGGTCTGGGACACTTTTAA 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	3
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	11

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM385822-16273	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
------------------TTCTGAGTATTCCAGATTGCAT 	1
---------------------TGAGTATTCCAGATTGCATAGC 	6
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAA 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	1

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360260-14326	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
------------------TTCTGAGTATTCCAGATTGCAT 	1
---------------------TGAGTATTCCAGATTGCATAGC 	13
-----------------------------------------------------------TATACGGTCTGGGACACTTTTA 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	8

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM286607-9796	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
---------------------TGAGTATTCCAGATTGCATAGC 	10
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	2

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM286604-9792	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
---------------------TGAGTATTCCAGATTGCATAG 	48
---------------------TGAGTATTCCAGATTGCATAGC 	49
---------------------TGAGTATTCCAGATTGCATAGCT 	3
------------------------------------------------------------ATACGGTCTGGGACACTTTTA 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	9
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	5
-------------------------------------------------------------TACGGTCTGGGACACTTTTA 	3

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM385744-16261	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
------------------TTCTGAGTATTCCAGATTGCAT 	1
---------------------TGAGTATTCCAGATTGCATAG 	2
---------------------TGAGTATTCCAGATTGCATAGC 	13
---------------------TGAGTATTCCAGATTGCATAGCT 	1
-----------------------------------------------------------TATACGGTCTGGGACACTTTT 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	6
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	4

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM322208-14317	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
--------------------CTGAGTATTCCAGATTGCATAG 	1
---------------------TGAGTATTCCAGATTGCATAGC 	7
---------------------TGAGTATTCCAGATTGCATAG 	2
-----------------------------------------------------------TATACGGTCTGGGACACTTTT 	1
-----------------------------------------------------------TATACGGTCTGGGACACTTTTA 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	1

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM385748-16264	TGAGTATTCCAGATTGCATAGC	TATACGGTCTGGGACACTTTTA	up	3	0

Secondary structure

CACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGA
------------------TTCTGAGTATTCCAGATTGCA 	1
------------------TTCTGAGTATTCCAGATTGCAT 	2
---------------------TGAGTATTCCAGATTGCATAGCT 	1
---------------------TGAGTATTCCAGATTGCATAG 	3
---------------------TGAGTATTCCAGATTGCATAGC 	25
-----------------------------------------------------------TATACGGTCTGGGACACTTTT 	1
-------------------------------------------------------------TACGGTCTGGGACACTTTTAACA 	9
-------------------------------------------------------------TACGGTCTGGGACACTTTTAAC 	6

Overlaps with: MNEST036495 MNEST036496
Overlaps with miRBase pre-miRNAs: dme-mir-960
HuntMi prediction: true miRNA