miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGTTGGTTATACATTCTT

selected species: Ciona intestinalis



21 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TGAGTTGGTTATACATTCTTG AGAATTTTAACCAACACAGA up 3 1


Secondary structure

AATATACAAAAACTCAACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACTGTCA
---------------------TGAGTTGGTTATACATTCTTGC 	5
---------------------TGAGTTGGTTATACATTCTTG 	9
-----------------------------------------------------------CAAGAATTTTAACCAACACAGA 	1
-----------------------------------------------------------CAAGAATTTTAACCAACAC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343283-14443 TGAGTTGGTTATACATTCTTG AGAATTTTAACCAACACAGA down 3 1


Secondary structure

TTTAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACTGTCAAGTGTCAACTACGAATATTTTATGCGTCAACGAATATTTTACGCAACGCTGCATTTGTATTTTATTATTCTTGGCAAAATATACGAAATCTCGACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTAACAGCA
------------CAAGAATTTTAACCAACACAGA 	1
------------CAAGAATTTTAACCAACAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTGC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTG 	9


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343283-14443 TGAGTTGGTTATACATTCTTG AGAATTTTAACCAACACATA up 3 1


Secondary structure

AATATACGAAAACTCGACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTATAATAGCAAGAATTTTAACCAACACATACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTTGC 	5
---------------------TGAGTTGGTTATACATTCTTG 	9
-------------------------------------------------------------CAAGAATTTTAACCAACAC 	1

Overlaps with: MNEST024925 MNEST024926
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343282-14442 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACAGA up 3 1


Secondary structure

AATATACAAAAACTCAACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACTGTCA
---------------------TGAGTTGGTTATACATTCTTGC 	8
---------------------TGAGTTGGTTATACATTCTTG 	6
-----------------------------------------------------------CAAGAATTTTAACCAACAC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343282-14442 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAGCACAGA up 3 1


Secondary structure

AATATACGAAAACTTGGCGGTTGAGTTGGTTATACATTCTTGCGGTATTCAAGTAACAGCAAGAATTTTAACCAGCACAGACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTTGC 	8
---------------------TGAGTTGGTTATACATTCTTG 	6

Overlaps with: MNEST024927
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Ciona intestinalis GSM343282-14442 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACAGA down 3 1


Secondary structure

TTTAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACTGTCAAGTGTCAACTACGAATATTTTATGCGTCAACGAATATTTTACGCAACGCTGCATTTGTATTTTATTATTCTTGGCAAAATATACGAAATCTCGACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTAACAGCAA
------------CAAGAATTTTAACCAACAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTGC 	8
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTG 	6


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Ciona intestinalis GSM343282-14442 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACAGA up 3 1


Secondary structure

AATGTACAAAAACTCAACGGTTGAGTTGGTTATACATTCTTGCGGTATTAAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTTGC 	8
---------------------TGAGTTGGTTATACATTCTTG 	6
-----------------------------------------------------------CAAGAATTTTAACCAACAC 	1

Overlaps with: MNEST024921 MNEST024922
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Ciona intestinalis GSM343282-14442 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACATA down 3 1


Secondary structure

TATTTAAGTATAATAGCAAGAATTTTAACCAACACATACGTCGGTTTTTACCGTCAACTACGAATATTTTATGCGTCAACAACGAATATTTTATGCACCGCTGCATTTGTATTTTATTATTCTTGGCAAAATATACGAAATCTCGACGGCTGAGTTGGTTATACATTCTTGCGATATTTAAGTATAATAGC
----------------CAAGAATTTTAACCAACAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTGC 	8
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTG 	6


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Ciona intestinalis GSM343282-14442 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACATA up 3 1


Secondary structure

AATATACGAAAACTCGACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTATAATAGCAAGAATTTTAACCAACACATACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTTGC 	8
---------------------TGAGTTGGTTATACATTCTTG 	6
-------------------------------------------------------------CAAGAATTTTAACCAACAC 	1

Overlaps with: MNEST024925 MNEST024926
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Ciona intestinalis GSM343284-14444 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAGCACAGA up 3 1


Secondary structure

AATATACGAAAACTTGGCGGTTGAGTTGGTTATACATTCTTGCGGTATTCAAGTAACAGCAAGAATTTTAACCAGCACAGACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTTGCG 	19
---------------------TGAGTTGGTTATACATTCTTGC 	26
---------------------TGAGTTGGTTATACATTCTTG 	5

Overlaps with: MNEST024927
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Ciona intestinalis GSM343284-14444 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACAGA down 3 1


Secondary structure

TTTAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACTGTCAAGTGTCAACTACGAATATTTTATGCGTCAACGAATATTTTACGCAACGCTGCATTTGTATTTTATTATTCTTGGCAAAATATACGAAATCTCGACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTAACAGCAA
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTGC 	26
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTG 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Ciona intestinalis GSM343284-14444 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACAGA up 3 1


Secondary structure

AATGTACAAAAACTCAACGGTTGAGTTGGTTATACATTCTTGCGGTATTAAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTTGCG 	19
---------------------TGAGTTGGTTATACATTCTTGC 	26
---------------------TGAGTTGGTTATACATTCTTG 	5

Overlaps with: MNEST024921 MNEST024922
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Ciona intestinalis GSM343284-14444 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACAGA up 3 1


Secondary structure

AATATACAAAAACTCAACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACTGTCA
---------------------TGAGTTGGTTATACATTCTTGC 	26
---------------------TGAGTTGGTTATACATTCTTG 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Ciona intestinalis GSM343284-14444 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACATA up 3 1


Secondary structure

AATATACGAAAACTCGACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTATAATAGCAAGAATTTTAACCAACACATACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTTGC 	26
---------------------TGAGTTGGTTATACATTCTTG 	5

Overlaps with: MNEST024925 MNEST024926
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Ciona intestinalis GSM343284-14444 TGAGTTGGTTATACATTCTTGC AAGAATTTTAACCAACACATA down 3 1


Secondary structure

TATTTAAGTATAATAGCAAGAATTTTAACCAACACATACGTCGGTTTTTACCGTCAACTACGAATATTTTATGCGTCAACAACGAATATTTTATGCACCGCTGCATTTGTATTTTATTATTCTTGGCAAAATATACGAAATCTCGACGGCTGAGTTGGTTATACATTCTTGCGATATTTAAGTATAATAGC
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTGCG 	19
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTGC 	26
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTTG 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Ciona intestinalis GSM343286 TGAGTTGGTTATACATTCTT GAATTTTAACCAACACAGA up 3 1


Secondary structure

AATATACAAAAACTCAACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACTGTCA
---------------------TGAGTTGGTTATACATTCTT 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Ciona intestinalis GSM343286 TGAGTTGGTTATACATTCTT GAATTTTAACCAGCACAGA up 3 1


Secondary structure

AATATACGAAAACTTGGCGGTTGAGTTGGTTATACATTCTTGCGGTATTCAAGTAACAGCAAGAATTTTAACCAGCACAGACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTT 	8

Overlaps with: MNEST024927
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Ciona intestinalis GSM343286 TGAGTTGGTTATACATTCTT GAATTTTAACCAACACAGA down 3 1


Secondary structure

AAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACTGTCAAGTGTCAACTACGAATATTTTATGCGTCAACGAATATTTTACGCAACGCTGCATTTGTATTTTATTATTCTTGGCAAAATATACGAAATCTCGACGGTTGAGTTGGTTATACATTCTTGCAGTATTT
---------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTT 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Ciona intestinalis GSM343286 TGAGTTGGTTATACATTCTT GAATTTTAACCAACACAGA up 3 1


Secondary structure

AATGTACAAAAACTCAACGGTTGAGTTGGTTATACATTCTTGCGGTATTAAAGTAACAGCAAGAATTTTAACCAACACAGACGTCGGTTTTTACCGTCA
-ATGTACAAAAACTCAACGGT 	1
---------------------TGAGTTGGTTATACATTCTT 	8

Overlaps with: MNEST024921 MNEST024922
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Ciona intestinalis GSM343286 TGAGTTGGTTATACATTCTT GAATTTTAACCAACACATA down 3 1


Secondary structure

TATTTAAGTATAATAGCAAGAATTTTAACCAACACATACGTCGGTTTTTACCGTCAACTACGAATATTTTATGCGTCAACAACGAATATTTTATGCACCGCTGCATTTGTATTTTATTATTCTTGGCAAAATATACGAAATCTCGACGGCTGAGTTGGTTATACATTCTTGCGATATTTAAGTATAATA
------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTGGTTATACATTCTT 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Ciona intestinalis GSM343286 TGAGTTGGTTATACATTCTT GAATTTTAACCAACACATA up 3 1


Secondary structure

AATATACGAAAACTCGACGGTTGAGTTGGTTATACATTCTTGCAGTATTTAAGTATAATAGCAAGAATTTTAACCAACACATACGTCGGTTTTTACCGTCA
---------------------TGAGTTGGTTATACATTCTT 	8

Overlaps with: MNEST024925 MNEST024926
Overlaps with miRBase pre-miRNAs: cin-mir-4003a-3
HuntMi prediction: true miRNA