miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGATCCATAATAAGTGTCAGG

selected species: Brachypodium distachyon



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGATCCATAATAAGTGTCAGG CGGCACTTATTATGGATCAGA up 1 0


Secondary structure

GCATGCCAAGCTATGTTTTATGTACTCCTTCTGATCCATAATAAGTGTCAGGAATTTAGTACAAAGTTACTTTGTACTAAATCCCCGGCACTTATTATGGATCAGAGGGAGTAAGAAAATATTAACTTTGTACT
----------------------------TTCTGATCCATAATAAGTGTC 	2
-------------------------------TGATCCATAATAAGTGTCAGG 	9
-------------------------------------------------------------------------------AATCCCCGGCACTTATTATGG 	1
----------------------------------------------------------------------------------CCCCGGCACTTATTATGGATC 	1
-------------------------------------------------------------------------------------CGGCACTTATTATGGATCAGA 	9
----------------------------------------------------------------------------------------CACTTATTATGGATCAGAGGGAGTA 	1
----------------------------------------------------------------------------------------CACTTATTATGGATCAGAGGG 	6
-----------------------------------------------------------------------------------------ACTTATTATGGATCAGAGGG 	1
--------------------------------------------------------------------------------------------TATTATGGATCAGAGGGAGTA 	1
----------------------------------------------------------------------------------------------TTATGGATCAGAGGGAGTA 	2

Overlaps with: MNEST041853
Overlaps with miRBase pre-miRNAs: bdi-MIR5181a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TGATCCATAATAAGTGTCAGG TGACACTTATTACAAATCATG up 3 0


Secondary structure

TGTACTCCCTCTGATCCATAATAAGTGTCAGGGATTTAGTACAAAGTTGTACTAACTTTGTACGAAATGCCTGACACTTATTACAAATCATGGATAAT
----CTCCCTCTGATCCATAATAAGTGT 	1
------CCCTCTGATCCATAATAAGTG 	1
-------CCTCTGATCCATAATAAGTGT 	1
---------TCTGATCCATAATAAGTGTCAGGG 	1
-----------TGATCCATAATAAGTGTCAGG 	9
---------------------------------------------------------------------------ACTTATTACAAATCATGGAT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Brachypodium distachyon GSM506620-12051 TGATCCATAATAAGTGTCAGG TGACACTTATAATGGATTGGA up 1 0


Secondary structure

ATACTCCCCTCTGATCCATAATAAGTGTCAGGATTTTAGTACAAAGTTGTGTACTAACTCTCTGACACTTATAATGGATTGGAGGGAGTAC
------CCCTCTGATCCATAATAAGTG 	1
-------CCTCTGATCCATAATAAGTGT 	1
-----------TGATCCATAATAAGTGTCAGG 	9
----------------------AAGTGTCAGGATTTTAGTACAAAG 	2
---------------------------TCAGGATTTTAGTACAAAGTTGTG 	1
-----------------------------------------------------------------CACTTATAATGGATTGGAGGGAGT 	2
------------------------------------------------------------------ACTTATAATGGATTGGAGGGA 	1


HuntMi prediction: true miRNA