miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGATTGAGCCGCGCCAATATC

selected species: Arabidopsis thaliana



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TGATTGAGCCGCGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

AAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAGCCGCGCCAATATCTCAGTACTCTCTCGTCTCT
--------------CCCTTTGATATTGGCCTGGTTC 	1
---------------CCTTTGATATTGGCCTGGTTC 	1
----------------------TATTGGCCTGGTTCACTCAGA 	9
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	165
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATAT 	3
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATA 	2
---------------------------------------------------------------------------------------------------------CAATATCTCAGTACTCTCTCG 	5

Overlaps with: MNEST003323
Overlaps with miRBase pre-miRNAs: ath-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415785 TGATTGAGCCGCGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

AAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAGCCGCGCCAATATCTCAGTACTCTCTCGTCTCT
-------AGAGAGTCCCTTTGATATTGGC 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATCTC 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATCT 	2
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	323
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATAT 	2
--------------------------------------------------------------------------------------------GATTGAGCCGCGCCAATATC 	1

Overlaps with: MNEST003323
Overlaps with miRBase pre-miRNAs: ath-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366870 TGATTGAGCCGCGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

AAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAGCCGCGCCAATATCTCAGTACTCTCTCGTCTCT
--------------CCCTTTGATATTGGCCTGGTTCA 	2
---------------CCTTTGATATTGGCCTGGTTCA 	5
----------------------TATTGGCCTGGTTCACTCAGA 	27
----------------------TATTGGCCTGGTTCACTCAG 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	36
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATA 	1

Overlaps with: MNEST003323
Overlaps with miRBase pre-miRNAs: ath-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM304284 TGATTGAGCCGCGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

AAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAGCCGCGCCAATATCTCAGTACTCTCTCGTCTCT
-------AGAGAGTCCCTTTGATATTGGC 	3
---------------CCTTTGATATTGGCCTGGTTC 	2
----------------------TATTGGCCTGGTTCACTCAGA 	12
----------------------TATTGGCCTGGTTCACTCAG 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	25
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATAT 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATA 	1

Overlaps with: MNEST003323
Overlaps with miRBase pre-miRNAs: ath-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366866 TGATTGAGCCGCGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

AAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAGCCGCGCCAATATCTCAGTACTCTCTCGTCTCT
-------AGAGAGTCCCTTTGATATTGGC 	8
---------------CCTTTGATATTGGCCTGGTTCA 	1
----------------------TATTGGCCTGGTTCACTCAGA 	132
----------------------TATTGGCCTGGTTCACTCA 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	207
---------------------------------------------------------------------------------------------ATTGAGCCGCGCCAATATC 	1
---------------------------------------------------------------------------------------------------------CAATATCTCAGTACTCTCTCG 	1

Overlaps with: MNEST003323
Overlaps with miRBase pre-miRNAs: ath-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM304285 TGATTGAGCCGCGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

AAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAGCCGCGCCAATATCTCAGTACTCTCTCGTCTCT
--------------CCCTTTGATATTGGCCTGGTTCA 	1
----------------------TATTGGCCTGGTTCACTCAGA 	1
----------------------TATTGGCCTGGTTCACTCA 	3
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	32
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATAT 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATA 	2

Overlaps with: MNEST003323
Overlaps with miRBase pre-miRNAs: ath-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM518432-13544 TGATTGAGCCGCGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

AAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAGCCGCGCCAATATCTCAGTACTCTCTCGTCTCT
-------AGAGAGTCCCTTTGATATTGGC 	2
-------------TCCCTTTGATATTGGCCTGGTTCA 	2
--------------CCCTTTGATATTGGCCTGGTTCA 	4
---------------CCTTTGATATTGGCCTGGTTCA 	1
----------------CTTTGATATTGGCCTGGTTCA 	1
----------------------TATTGGCCTGGTTCACTCAGA 	115
------------------------TTGGCCTGGTTCACTCAGA 	2
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	169
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATAT 	3
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATA 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATCT 	1
---------------------------------------------------------------------------------------------------------CAATATCTCAGTACTCTCTCG 	1

Overlaps with: MNEST003323
Overlaps with miRBase pre-miRNAs: ath-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM277608 TGATTGAGCCGCGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

AAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAGCCGCGCCAATATCTCAGTACTCTCTCGTCTCT
----------------------------------------------------------------------------------------ATCTGATTGAGCCGCGCCAAT 	3
-----------------------------------------------------------------------------------------TCTGATTGAGCCGCGCCAATATC 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATCT 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATA 	25
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATAT 	4
-------------------------------------------------------------------------------------------TGATTGAGCCGCGCCAATATC 	1191
--------------------------------------------------------------------------------------------GATTGAGCCGCGCCAATATC 	14

Overlaps with: MNEST003323
Overlaps with miRBase pre-miRNAs: ath-MIR171a
HuntMi prediction: true miRNA