miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGATTGAGCCGTGCCAATATC

selected species: Brachypodium distachyon



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TTATAGACGCGGTATTGGTGCGGTTCAATCAGAAAGCTGGCGCTCCGGACGCAAAAGGGGTTCCTCTCTTTGATTGAGCCGTGCCAATATCACGTTTTGC
------ACGCGGTATTGGTGCGGTTCA 	3
------ACGCGGTATTGGTGCGGTTC 	1
-------CGCGGTATTGGTGCGGTTCAA 	1
---------CGGTATTGGTGCGGTTCAATCA 	8
---------CGGTATTGGTGCGGTTCAATC 	30
---------CGGTATTGGTGCGGTTCAAT 	1
---------CGGTATTGGTGCGGTTCAA 	1
---------------------------------------------CGGACGCAAAAGGGGTTCC 	1
----------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	1
----------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	12182
----------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	19
-----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8
------------------------------------------------------------------------ATTGAGCCGTGCCAATATCAC 	1
------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	12
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	16
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	5
--------------------------------------------------------------------------TGAGCCGTGCCAATATCAC 	1


Overlaps with: MNEST041766 MNEST048312
Overlaps with miRBase pre-miRNAs: bdi-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TGATTGAGCCGTGCCAATATC TGTTGGCACGGTTCAATCAAA down 0 0


Secondary structure

TATACTGGCTGGGAGAGTGCGATGTTGGCACGGTTCAATCAAATCGGGTGGTCTCTGCATGCACTGGCTTGCGAGCAAGCTGCGATGATGTTTCGCTCCATCTGATTGAGCCGTGCCAATATCGCAAGCTTCTTTGCCTAGC
----------------------TGTTGGCACGGTTCAATCAA 	1
-------------------------------------------------------------------------------------------------CCATCTGATTGAGCCGTGCCA 	1
--------------------------------------------------------------------------------------------------CATCTGATTGAGCCGTGCCAA 	2
---------------------------------------------------------------------------------------------------ATCTGATTGAGCCGTGCCAATATC 	1
-----------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	124
-----------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATAT 	2
------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	12182
------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	19
-------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8
--------------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	12


Overlaps with: MNEST041765
Overlaps with miRBase pre-miRNAs: bdi-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Brachypodium distachyon GSM506620-12051 TGATTGAGCCGTGCCAATATC TGTTGGCTCGACTCACTCAGA down 3 0


Secondary structure

AATGATGAAATGGCCACTATGATGTTGGCTCGACTCACTCAGACGACACCGGCCGGAGCGATGCGTGCGTGCTAGCTCGACGGCGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGCAT
--------------CACTATGATGTTGGCTCGACTC 	1
--------------CACTATGATGTTGGCTCGACT 	1
-----------------TATGATGTTGGCTCGACTCAC 	34
-------------------TGATGTTGGCTCGACTCACTC 	1
----------------------TGTTGGCTCGACTCACTCAGA 	182
----------------------TGTTGGCTCGACTCACTCAG 	1
------------------------TTGGCTCGACTCACTCAGACG 	1
------------------------TTGGCTCGACTCACTCAGA 	1
---------------------------------------------------------------------------------GGCGTGTTTCTGATTGAGCC 	1
-----------------------------------------------------------------------------------CGTGTTTCTGATTGAGCCGTGCCA 	7
--------------------------------------------------------------------------------------GTTTCTGATTGAGCCGTGCCA 	3
---------------------------------------------------------------------------------------TTTCTGATTGAGCCGTGCCAA 	2
----------------------------------------------------------------------------------------TTCTGATTGAGCCGTGCCAATATC 	2
------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	124
------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATAT 	2
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCTT 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	11
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	12182
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	19
--------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8
---------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	12
----------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCT 	1
--------------------------------------------------------------------------------------------------GCCGTGCCAATATCTTAGTGC 	1



Overlaps with miRBase pre-miRNAs: bdi-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Brachypodium distachyon GSM506620-12051 TGATTGAGCCGTGCCAATATC TATTGGTGAGGTTCAATCCGA down 2 0


Secondary structure

GACCATGCAATGGAAGGAGCGATATTGGTGAGGTTCAATCCGATGCTAGATTTTACATCAGTGTTAAGATCTGTATCTGATTGAGCCGTGCCAATATCTCTCTTCTTCTAATGTCGA
-------------------------------------------------------------------GATCTGTATCTGATTGAGCCGTGC 	1
--------------------------------------------------------------------------ATCTGATTGAGCCGTGCCAATATC 	1
----------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	124
----------------------------------------------------------------------------CTGATTGAGCCGTGCCAATAT 	2
-----------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	11
-----------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	12182
-----------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	19
------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8
-------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	12
--------------------------------------------------------------------------------TTGAGCCGTGCCAATATCTCTC 	1
--------------------------------------------------------------------------------TTGAGCCGTGCCAATATCTCT 	22
--------------------------------------------------------------------------------TTGAGCCGTGCCAATATCT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Brachypodium distachyon GSM506621-23192 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TTATAGACGCGGTATTGGTGCGGTTCAATCAGAAAGCTGGCGCTCCGGACGCAAAAGGGGTTCCTCTCTTTGATTGAGCCGTGCCAATATCACGTTTTGC
------ACGCGGTATTGGTGCGGTTCA 	1
------ACGCGGTATTGGTGCGGTTCAATC 	1
---------CGGTATTGGTGCGGTTCAATCA 	5
---------CGGTATTGGTGCGGTTCAATC 	7
-----------GTATTGGTGCGGTTCAATCAG 	1
------------------TGCGGTTCAATCAGAAAGCTGG 	1
------------------TGCGGTTCAATCAGAAAGCTGGCGC 	1
----------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	1
----------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	32
----------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
----------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	429
-----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
------------------------------------------------------------------------ATTGAGCCGTGCCAATATCACG 	1
------------------------------------------------------------------------ATTGAGCCGTGCCAATATCACGTTT 	1
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	3


Overlaps with: MNEST041766 MNEST048312
Overlaps with miRBase pre-miRNAs: bdi-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Brachypodium distachyon GSM506621-23192 TGATTGAGCCGTGCCAATATC TGTTGGCACGGTTCAATCAAA down 0 0


Secondary structure

TATACTGGCTGGGAGAGTGCGATGTTGGCACGGTTCAATCAAATCGGGTGGTCTCTGCATGCACTGGCTTGCGAGCAAGCTGCGATGATGTTTCGCTCCATCTGATTGAGCCGTGCCAATATCGCAAGCTTCTTTGCCTAGC
--------------------GATGTTGGCACGGTTCAATCA 	2
----------------------TGTTGGCACGGTTCAATCAAA 	13
-----------------------GTTGGCACGGTTCAATCAAA 	1
----------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATATC 	1
-----------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	3
------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	32
------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCG 	1
------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	429
-------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3


Overlaps with: MNEST041765
Overlaps with miRBase pre-miRNAs: bdi-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Brachypodium distachyon GSM506621-23192 TGATTGAGCCGTGCCAATATC TATTGGTGAGGTTCAATCCGA down 2 0


Secondary structure

GACCATGCAATGGAAGGAGCGATATTGGTGAGGTTCAATCCGATGCTAGATTTTACATCAGTGTTAAGATCTGTATCTGATTGAGCCGTGCCAATATCTCTCTTCTTCTAATGTCGA
---------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATATC 	1
----------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	3
-----------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	32
-----------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	3
-----------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
-----------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	429
------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
--------------------------------------------------------------------------------TTGAGCCGTGCCAATATCTCT 	3
--------------------------------------------------------------------------------TTGAGCCGTGCCAATATCTC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Brachypodium distachyon GSM506621-23192 TGATTGAGCCGTGCCAATATC TGTTGGCTCGACTCACTCAGA down 3 0


Secondary structure

AATGATGAAATGGCCACTATGATGTTGGCTCGACTCACTCAGACGACACCGGCCGGAGCGATGCGTGCGTGCTAGCTCGACGGCGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGCAT
----------------------TGTTGGCTCGACTCACTCAGA 	44
----------------------TGTTGGCTCGACTCACTCAGACGA 	2
----------------------TGTTGGCTCGACTCACTCAGACGACA 	3
----------------------TGTTGGCTCGACTCACTCAGACGAC 	1
------------------------TTGGCTCGACTCACTCAGACGACAC 	2
------------------------TTGGCTCGACTCACTCAGACGAC 	1
---------------------------------------------ACACCGGCCGGAGCGATGCGTG 	2
---------------------------------------------------------------------------------------TTTCTGATTGAGCCGTGCCAA 	1
-----------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATATC 	1
------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	3
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	32
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	3
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCTT 	1
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
-------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	429
--------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3



Overlaps with miRBase pre-miRNAs: bdi-MIR171d
HuntMi prediction: true miRNA