miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGATTGAGCCGTGCCAATATC

selected species: Glycine max

23 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM543396	TGATTGAGCCGTGCCAATATC	TGTTGGCTTGGCTCAATCAAA	down	1	0

Secondary structure

ATAATTATTTGATGTTGGCTTGGCTCAATCAAATTAAAATTTTTAAAGATTTTGTTAACTTTTTTGATCTGATTGAGCCGTGCCAATATCATATTCATC
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	12

Overlaps with miRBase pre-miRNAs: gma-MIR171g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM543396	TGATTGAGCCGTGCCAATATC	TATTGGTACGGTTCAATCAGA	down	0	0

Secondary structure

AAGGGCTTGAGATATTGGTACGGTTCAATCAGAAGACAGTGCTTTATGATTCTAAAGCTCTCTTATTTGATTGAGCCGTGCCAATATCACATGCAAA
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	12

Overlaps with miRBase pre-miRNAs: gma-MIR171o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM543396	TGATTGAGCCGTGCCAATATC	TATTGGTACGGTTCAATCAGA	down	0	0

Secondary structure

TTCTCTACAACATTGGTGCTGCTGGTTCTTATAACTTCAAACATGTAATTAAGGGCCTGAGATATTGGTACGGTTCAATCAGAAGGCAGTGCTTTATGATTTCAAAGCTCTCTTATTTGATTGAGCCGTGCCAATATCACATGCAAACTTTGATCATGGCTTGTAACAATTGGCAGCTAGCTAACACATTAAAGGTT
---------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	12

Overlaps with miRBase pre-miRNAs: gma-MIR171f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM543396	TGATTGAGCCGTGCCAATATC	TATTGGCCTGGTTCACTCAGA	down	2	0

Secondary structure

TAAGACACAAGTATATGAAGTAGTTATTGTGATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACAAAATACATGTTGTGATTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATCTCAGTGCTATTTCATGTTTGCAAATGATA
-----------------------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	12

Overlaps with: MNEST046672
Overlaps with miRBase pre-miRNAs: gma-MIR171j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Glycine max	GSM543394	TGATTGAGCCGTGCCAATATC	TGTTGGCTTGGCTCAATCAAA	down	1	0

Secondary structure

ATAATTATTTGATGTTGGCTTGGCTCAATCAAATTAAAATTTTTAAAGATTTTGTTAACTTTTTTGATCTGATTGAGCCGTGCCAATATCATATTCATC
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	30

Overlaps with miRBase pre-miRNAs: gma-MIR171g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Glycine max	GSM543394	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATCAGA	down	0	0

Secondary structure

GAGAACTTGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGTTTTATGATCCAAAAACTCTGTGTTATTTGATTGAGCCGTGCCAATATCACATGTAAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	30

Overlaps with miRBase pre-miRNAs: gma-MIR171q
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Glycine max	GSM543394	TGATTGAGCCGTGCCAATATC	TATTGGTACGGTTCAATCAGA	down	0	0

Secondary structure

AAGGGCTTGAGATATTGGTACGGTTCAATCAGAAGACAGTGCTTTATGATTCTAAAGCTCTCTTATTTGATTGAGCCGTGCCAATATCACATGCAAA
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	30

Overlaps with miRBase pre-miRNAs: gma-MIR171o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Glycine max	GSM543394	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATCAGA	down	0	0

Secondary structure

CGTATAATTTAAGAACTTGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGTTTTATGATCCAAAAGCTCTGTGTTATTTGATTGAGCCGTGCCAATATCACATGTTATTGATCTCGGG
-------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	30

Overlaps with: MNEST040457
Overlaps with miRBase pre-miRNAs: gma-MIR171c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Glycine max	GSM543394	TGATTGAGCCGTGCCAATATC	TATTGGTACGGTTCAATCAGA	down	0	0

Secondary structure

TTCTCTACAACATTGGTGCTGCTGGTTCTTATAACTTCAAACATGTAATTAAGGGCCTGAGATATTGGTACGGTTCAATCAGAAGGCAGTGCTTTATGATTTCAAAGCTCTCTTATTTGATTGAGCCGTGCCAATATCACATGCAAACTTTGATCATGGCTTGTAACAATTGGCAGCTAGCTAACACATTAAAGGTT
---------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	30

Overlaps with miRBase pre-miRNAs: gma-MIR171f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Glycine max	GSM543394	TGATTGAGCCGTGCCAATATC	TATTGGCCTGGTTCACTCAGA	down	2	0

Secondary structure

TAAGACACAAGTATATGAAGTAGTTATTGTGATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACAAAATACATGTTGTGATTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATCTCAGTGCTATTTCATGTTTGCAAATGATA
-----------------------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	30

Overlaps with: MNEST046672
Overlaps with miRBase pre-miRNAs: gma-MIR171j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Glycine max	GSM543393	TGATTGAGCCGTGCCAATATC	TGTTGGCTTGGCTCAATCAAA	down	1	0

Secondary structure

ATAATTATTTGATGTTGGCTTGGCTCAATCAAATTAAAATTTTTAAAGATTTTGTTAACTTTTTTGATCTGATTGAGCCGTGCCAATATCATATTCATC
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	26

Overlaps with miRBase pre-miRNAs: gma-MIR171g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Glycine max	GSM543393	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATCAGA	down	0	0

Secondary structure

GAGAACTTGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGTTTTATGATCCAAAAACTCTGTGTTATTTGATTGAGCCGTGCCAATATCACATGTAAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	26

Overlaps with miRBase pre-miRNAs: gma-MIR171q
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Glycine max	GSM543393	TGATTGAGCCGTGCCAATATC	TATTGGTACGGTTCAATCAGA	down	0	0

Secondary structure

AAGGGCTTGAGATATTGGTACGGTTCAATCAGAAGACAGTGCTTTATGATTCTAAAGCTCTCTTATTTGATTGAGCCGTGCCAATATCACATGCAAA
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	26

Overlaps with miRBase pre-miRNAs: gma-MIR171o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Glycine max	GSM543393	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATCAGA	down	0	0

Secondary structure

CGTATAATTTAAGAACTTGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGTTTTATGATCCAAAAGCTCTGTGTTATTTGATTGAGCCGTGCCAATATCACATGTTATTGATCTCGGG
-------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	26

Overlaps with: MNEST040457
Overlaps with miRBase pre-miRNAs: gma-MIR171c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Glycine max	GSM543393	TGATTGAGCCGTGCCAATATC	TATTGGTACGGTTCAATCAGA	down	0	0

Secondary structure

TTCTCTACAACATTGGTGCTGCTGGTTCTTATAACTTCAAACATGTAATTAAGGGCCTGAGATATTGGTACGGTTCAATCAGAAGGCAGTGCTTTATGATTTCAAAGCTCTCTTATTTGATTGAGCCGTGCCAATATCACATGCAAACTTTGATCATGGCTTGTAACAATTGGCAGCTAGCTAACACATTAAAGGTT
---------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	26

Overlaps with miRBase pre-miRNAs: gma-MIR171f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Glycine max	GSM543393	TGATTGAGCCGTGCCAATATC	TATTGGCCTGGTTCACTCAGA	down	2	0

Secondary structure

TAAGACACAAGTATATGAAGTAGTTATTGTGATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACAAAATACATGTTGTGATTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATCTCAGTGCTATTTCATGTTTGCAAATGATA
-----------------------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	26

Overlaps with: MNEST046672
Overlaps with miRBase pre-miRNAs: gma-MIR171j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Glycine max	GSM543395	TGATTGAGCCGTGCCAATATC	TGTTGGCTTGGCTCAATCAAA	down	1	0

Secondary structure

ATAATTATTTGATGTTGGCTTGGCTCAATCAAATTAAAATTTTTAAAGATTTTGTTAACTTTTTTGATCTGATTGAGCCGTGCCAATATCATATTCATC
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	15

Overlaps with miRBase pre-miRNAs: gma-MIR171g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Glycine max	GSM543395	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATCAGA	down	0	0

Secondary structure

GAGAACTTGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGTTTTATGATCCAAAAACTCTGTGTTATTTGATTGAGCCGTGCCAATATCACATGTAAT
---------AGATATTGGTGCGGTTCAATC 	6
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	15

Overlaps with miRBase pre-miRNAs: gma-MIR171q
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Glycine max	GSM543395	TGATTGAGCCGTGCCAATATC	TGTTGGACGGTTCAATCAAA	down	0	1

Secondary structure

AATGTTTATAGTAATTTGTTCTGTTGGAGGAATACATGGGGATGTTGGACGGTTCAATCAAATCAAATCTCCTAATGGCTGGGTCCTTTGGTATGATTGAGCCGTGCCAATATCAAATCCTGCTTAACATGAATTTTTTTTATAGATTATATA
---------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	15

Overlaps with miRBase pre-miRNAs: gma-MIR171e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Glycine max	GSM543395	TGATTGAGCCGTGCCAATATC	TATTGGTACGGTTCAATCAGA	down	0	0

Secondary structure

AAGGGCTTGAGATATTGGTACGGTTCAATCAGAAGACAGTGCTTTATGATTCTAAAGCTCTCTTATTTGATTGAGCCGTGCCAATATCACATGCAAA
-------TGAGATATTGGTACGGTTCAA 	7
---------AGATATTGGTACGGTTCAATC 	7
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	15

Overlaps with miRBase pre-miRNAs: gma-MIR171o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Glycine max	GSM543395	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATCAGA	down	0	0

Secondary structure

CGTATAATTTAAGAACTTGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGTTTTATGATCCAAAAGCTCTGTGTTATTTGATTGAGCCGTGCCAATATCACATGTTATTGATCTCGGG
-------------------AGATATTGGTGCGGTTCAATC 	6
-------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	15

Overlaps with: MNEST040457
Overlaps with miRBase pre-miRNAs: gma-MIR171c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Glycine max	GSM543395	TGATTGAGCCGTGCCAATATC	TATTGGTACGGTTCAATCAGA	down	0	0

Secondary structure

TTCTCTACAACATTGGTGCTGCTGGTTCTTATAACTTCAAACATGTAATTAAGGGCCTGAGATATTGGTACGGTTCAATCAGAAGGCAGTGCTTTATGATTTCAAAGCTCTCTTATTTGATTGAGCCGTGCCAATATCACATGCAAACTTTGATCATGGCTTGTAACAATTGGCAGCTAGCTAACACATTAAAGGTT
---------------------------------------------------------TGAGATATTGGTACGGTTCAA 	7
-----------------------------------------------------------AGATATTGGTACGGTTCAATC 	7
---------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	15

Overlaps with miRBase pre-miRNAs: gma-MIR171f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Glycine max	GSM543395	TGATTGAGCCGTGCCAATATC	TATTGGCCTGGTTCACTCAGA	down	2	0

Secondary structure

TAAGACACAAGTATATGAAGTAGTTATTGTGATATTGGCCTGGTTCACTCAGACATGTATACCACGGCACGGTTGTGTCCTTGCTAGAAAGATTTAAAACAAAATACATGTTGTGATTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATCTCAGTGCTATTTCATGTTTGCAAATGATA
-----------------------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	15

Overlaps with: MNEST046672
Overlaps with miRBase pre-miRNAs: gma-MIR171j
HuntMi prediction: true miRNA