miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGATTGAGCCGTGCCAATATC

selected species: Oryza sativa



63 records found  

Showing records 1 - 50

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#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
------------TGTTGGCCCGGCTCACTCAGA 	13
------------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	1
-------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	139
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM693280 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------AAGCTTGTGCTCCGGAAGCGAGGA 	1
--------------------------------------------------------------------TTGATTGAGCCGTGCCAATAT 	1
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	139
---------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2
---------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	2
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	1

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM693280 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
-------------------GGATATTGGTGCGGTTCAATC 	13
---------------------ATATTGGTGCGGTTCAATCA 	1
----------------------------TGCGGTTCAATCAGAAAGCTTGTG 	2
-----------------------------------------------------------------------------TTGATTGAGCCGTGCCAATAT 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	139
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	2
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	1

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM693280 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
----------------------TGTTGGCTCGGCTCACTCAGA 	51
----------------------TGTTGGCTCGGCTCACTCAGACGG 	4
-----------------------GTTGGCTCGGCTCACTCAGA 	2
-----------------------GTTGGCTCGGCTCACTCAGAC 	1
------------------------TTGGCTCGGCTCACTCAGACGG 	1
--------------------------------------------------------------------------------------------TGTTTCTGATTGAGCCGTGCC 	5
------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	1
-------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	139
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM693280 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
--------------------------------TGTTGGCATGGTTCAATCAAA 	1
------------------------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	1
-------------------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	139
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
-----------------------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACA 	1

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM571078-22531 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
------------TGTTGGCCCGGCTCACTCAGA 	6
-------------GTTGGCCCGGCTCACTCAGA 	1
-------------------------------------------------------------------------------------------------GAACTTCTGATTGAGCCGTGCC 	1
-------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	180
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	11
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
---------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM571078-22531 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
------ACGGGATATTGGGGCGGTTCAA 	1
---------GGATATTGGGGCGGTTCAATC 	2
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	180
---------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	11
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	1
---------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	1
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	1

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM571078-22531 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
----------------ACGGGATATTGGTGCGGTTCA 	3
-------------------GGATATTGGTGCGGTTCAATC 	19
-------------------GGATATTGGTGCGGTTCAATCA 	1
---------------------ATATTGGTGCGGTTCAATCA 	4
-----------------------ATTGGTGCGGTTCAATCAGAAAG 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	180
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	11
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
-------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	1
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	1

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM571078-22531 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
----------------------TGTTGGCTCGGCTCACTCAGA 	4
----------------------TGTTGGCTCGGCTCACTCAGACGG 	1
-----------------------GTTGGCTCGGCTCACTCAGACGG 	1
-----------------------GTTGGCTCGGCTCACTCAGA 	1
------------------------TTGGCTCGGCTCACTCAGACGG 	1
-------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	180
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	11
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
---------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM571078-22531 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
-------------------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	180
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	11
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
---------------------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
-----------------------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACA 	2
-----------------------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM520638-18676 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
-------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	2
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	2
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	479
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	1
---------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Oryza sativa GSM520638-18676 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	2
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	479
---------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	1
----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
-----------------------------------------------------------------------ATTGAGCCGTGCCAATATCACG 	1
------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	2
------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	2
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	92
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	4

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Oryza sativa GSM520638-18676 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
---------------------ATATTGGTGCGGTTCAATCA 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	2
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	479
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	1
-------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
--------------------------------------------------------------------------------ATTGAGCCGTGCCAATATCACG 	1
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	2
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	2
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	92
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	4

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Oryza sativa GSM520638-18676 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
----------------------TGTTGGCTCGGCTCACTCAGA 	1
------------------------TTGGCTCGGCTCACTCAGACG 	1
-------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	2
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	2
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	479
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	1
---------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Oryza sativa GSM520638-18676 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
-------------------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	2
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	2
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	479
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	1
---------------------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
-----------------------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	2
-----------------------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	2

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Oryza sativa GSM686040-31373 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
-------------GTTGGCCCGGCTCACTCAGATGG 	1
------------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	2
-------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	234
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	18

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Oryza sativa GSM686040-31373 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	234
---------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
---------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	18

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Oryza sativa GSM686040-31373 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
---------------------ATATTGGTGCGGTTCAATCA 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	234
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	18

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Oryza sativa GSM686040-31373 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
----------------------TGTTGGCTCGGCTCACTCAGACGG 	34
----------------------TGTTGGCTCGGCTCACTCAGA 	10
-----------------------GTTGGCTCGGCTCACTCAGACGG 	7
-----------------------GTTGGCTCGGCTCACTCAGAC 	1
------------------------TTGGCTCGGCTCACTCAGACGG 	5
------------------------------------------------------------------------------------------TGTGTTTCTGATTGAGCCGTGCC 	1
------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	2
-------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	234
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	18

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Oryza sativa GSM686040-31373 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
-----------------------------CGATGTTGGCATGGTTCAATC 	1
------------------------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	2
-------------------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	234
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	18
-----------------------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACA 	2

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Oryza sativa GSM520640-18679 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
-------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	845
---------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	5
----------------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	7
-----------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCT 	1

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Oryza sativa GSM520640-18679 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	845
----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	5
-----------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	7
-----------------------------------------------------------------------ATTGAGCCGTGCCAATATCACGTC 	1
-----------------------------------------------------------------------ATTGAGCCGTGCCAATATCACG 	1
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	89
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	9
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGTCG 	4
-------------------------------------------------------------------------TGAGCCGTGCCAATATCACGT 	1

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Oryza sativa GSM520640-18679 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	845
-------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	5
--------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	7
--------------------------------------------------------------------------------ATTGAGCCGTGCCAATATCACGTC 	1
--------------------------------------------------------------------------------ATTGAGCCGTGCCAATATCACG 	1
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	89
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	9
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGTCG 	4
----------------------------------------------------------------------------------TGAGCCGTGCCAATATCACGT 	1

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Oryza sativa GSM520640-18679 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
-------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	845
---------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	5
----------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	7
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCT 	1

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Oryza sativa GSM520640-18679 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
-----------------------------CGATGTTGGCATGGTTCAATC 	2
-------------------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	845
---------------------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	5
----------------------------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	7

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Oryza sativa GSM571077-22529 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
------------TGTTGGCCCGGCTCACTCAGA 	10
------------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	199
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
---------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Oryza sativa GSM571077-22529 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	199
---------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	2
------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Oryza sativa GSM571077-22529 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
------------------GGGATATTGGTGCGGTTCA 	1
-------------------GGATATTGGTGCGGTTCAATC 	13
-------------------GGATATTGGTGCGGTTCAAT 	1
---------------------ATATTGGTGCGGTTCAATC 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	199
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
-------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	2
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Oryza sativa GSM571077-22529 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
----------------------TGTTGGCTCGGCTCACTCAGA 	5
----------------------TGTTGGCTCGGCTCACTCAGACGG 	1
------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	199
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
---------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Oryza sativa GSM571077-22529 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
-----------------------------CGATGTTGGCATGGTTCAATC 	1
--------------------------------TGTTGGCATGGTTCAATCAAA 	1
------------------------------------------------------------------------------------------------------------------TCTGATTGAGCCGTGCCAATA 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	199
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
---------------------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	8
-----------------------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Oryza sativa GSM686039-31370 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
-----------------------------------------------------------------------------------------------------TTCTGATTGAGCCGTGCCAATATC 	2
-------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	4
-------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATA 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	264
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
---------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
-----------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCT 	2

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Oryza sativa GSM686039-31370 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	264
---------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
---------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Oryza sativa GSM686039-31370 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
-------------------GGATATTGGTGCGGTTCAATC 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	264
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
-------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Oryza sativa GSM686039-31370 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
----------------------TGTTGGCTCGGCTCACTCAGACGG 	75
----------------------TGTTGGCTCGGCTCACTCAGA 	36
-----------------------GTTGGCTCGGCTCACTCAGACGG 	15
-----------------------GTTGGCTCGGCTCACTCAGAC 	1
------------------------TTGGCTCGGCTCACTCAGACGG 	12
---------------------------------------------------------------------------------------------GTTTCTGATTGAGCCGTGCC 	1
-----------------------------------------------------------------------------------------------TTCTGATTGAGCCGTGCCAATATC 	2
-------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	4
-------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATA 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	264
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
---------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCT 	2

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Oryza sativa GSM686039-31370 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
-----------------------------CGATGTTGGCATGGTTCAATC 	3
-------------------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	4
-------------------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATA 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	264
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	4
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
---------------------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
36 Oryza sativa GSM520634-18667 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
-----------------------------------------------------------------------------------------------------TTCTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	20

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
37 Oryza sativa GSM520634-18667 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	20
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	2

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
38 Oryza sativa GSM520634-18667 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	20
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	2

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
39 Oryza sativa GSM520634-18667 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
-----------------------------------------------------------------------------------------------TTCTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	20

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
40 Oryza sativa GSM520634-18667 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
--------------------------------TGTTGGCATGGTTCAATCAAA 	2
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	20

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
41 Oryza sativa GSM520636-18672 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
------------TGTTGGCCCGGCTCACTCAGA 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	21

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
42 Oryza sativa GSM520636-18672 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	21
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	13

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
43 Oryza sativa GSM520636-18672 TGATTGAGCCGTGCCAATATC TATTGGTGCGGTTCAATCAGA down 0 0


Secondary structure

TGCTCTCTATGTGGGAACGGGATATTGGTGCGGTTCAATCAGAAAGCTTGTGCTCCGAAGGCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACGTCGCCTTTGCAGCTGC
-------------------GGATATTGGTGCGGTTCAATCAGA 	1
-------------------GGATATTGGTGCGGTTCAATC 	1
------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	21
---------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	13

Overlaps with: MNEST046091 MNEST046379
Overlaps with miRBase pre-miRNAs: osa-MIR171c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
44 Oryza sativa GSM520636-18672 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	21

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
45 Oryza sativa GSM520636-18672 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	21

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
46 Oryza sativa GSM520635-18669 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
-------TATGATGTTGGCCCGGCTCACTCA 	2
------------TGTTGGCCCGGCTCACTCAGATGG 	1
-----------------------------------------------------------------------------------------------------TTCTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11
----------------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATCTCAGC 	1

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
47 Oryza sativa GSM520635-18669 TGATTGAGCCGTGCCAATATC TGTTGGCATGGTTCAATCAAA down 0 0


Secondary structure

CCAAGCGTTTTTCTTGGGCTGGGAGAGTGCGATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGCCAATATCACAAGCTTGCCTGGCTTAATTACATGTAG
------------------------------------------------------------------------------------------------------------GTTTGGTCTGATTGAGCCGTGCCA 	1
---------------------------------------------------------------------------------------------------------------TGGTCTGATTGAGCCGTGCCAATATC 	1
-----------------------------------------------------------------------------------------------------------------GTCTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11
--------------------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCACA 	1
-----------------------------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACA 	1

Overlaps with: MNEST004455
Overlaps with miRBase pre-miRNAs: osa-MIR171f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
48 Oryza sativa GSM520635-18669 TGATTGAGCCGTGCCAATATC TGTTGGCTCGGCTCACTCAGA down 2 0


Secondary structure

GGGAATGAAATGGTAGCTATGATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTAGCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGTGT
-------------------TGATGTTGGCTCGGCTCACTCAGA 	1
----------------------TGTTGGCTCGGCTCACTCAGACGG 	2
-----------------------GTTGGCTCGGCTCACTCAGACGG 	2
----------------------------------------------------------------------------------------------TTTCTGATTGAGCCGTGCCA 	1
----------------------------------------------------------------------------------------------TTTCTGATTGAGCCGTGCCAATATC 	8
-----------------------------------------------------------------------------------------------TTCTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11

Overlaps with: MNEST048893 MNEST048905
Overlaps with miRBase pre-miRNAs: osa-MIR171e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
49 Oryza sativa GSM520637-18674 TGATTGAGCCGTGCCAATATC TGTTGGCCCGGCTCACTCAGA down 2 0


Secondary structure

TTGTAGCTATGATGTTGGCCCGGCTCACTCAGATGGATCATCGGTGCAGAAGAGTGCATGAATCTGATGCAGTCTCAGTGTAGTATGCTCCATGCTGGAACTTCTGATTGAGCCGTGCCAATATCTCAGCACCA
-------------------------------------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	59

Overlaps with: MNEST004450
Overlaps with miRBase pre-miRNAs: osa-MIR171d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
50 Oryza sativa GSM520637-18674 TGATTGAGCCGTGCCAATATC TATTGGGGCGGTTCAATCAGA down 1 0


Secondary structure

GCGACGACGGGATATTGGGGCGGTTCAATCAGAAAGCTTGTGCTCCGGAAGCGAGGAGCTCTACTCTTTTGATTGAGCCGTGCCAATATCACGTCGCAT
---------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	59
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	20
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	1
------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGTCG 	1

Overlaps with: MNEST041982 MNEST048896
Overlaps with miRBase pre-miRNAs: osa-MIR171b
HuntMi prediction: true miRNA