miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGATTGAGCCGTGCCAATATC

selected species: Solanum lycopersicum



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TGATTGAGCCGTGCCAATATC TGTTGGAATGGCTCAATCTAA down 2 0


Secondary structure

GAGTTGGTGTGATGTTGGAATGGCTCAATCTAATGAAAGTTTCCAAACATTTTTGGTCATTTTAATTTGATTGAGCCGTGCCAATATCATATCGTCT
---------TGATGTTGGAATGGCTCAAT 	8
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATCAT 	2
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	360
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	2021
-------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	121
-------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	143
--------------------------------------------------------------------GATTGAGCCGTGCCAATATCA 	1
--------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	7
---------------------------------------------------------------------ATTGAGCCGTGCCAATATCA 	1
---------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	11
----------------------------------------------------------------------TTGAGCCGTGCCAATATCATA 	8
----------------------------------------------------------------------TTGAGCCGTGCCAATATCAT 	1
----------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	3



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304985 TGATTGAGCCGTGCCAATATC TGTTGGTGTGGTTCAATTAGA down 0 0


Secondary structure

GATCAACTTGCGATGTTGGTGTGGTTCAATTAGATAACAATCTCCACGTAAAATTATAGAGTTTGTTATTTGATTGAGCCGTGCCAATATCACATGTAAAG
----------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	360
----------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	2021
----------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	121
----------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	143
-----------------------------------------------------------------------GATTGAGCCGTGCCAATATCA 	1
-----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	7
------------------------------------------------------------------------ATTGAGCCGTGCCAATATCA 	1
------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	11
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCACA 	6
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	11
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	3



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Solanum lycopersicum GSM304985 TGATTGAGCCGTGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

ATTATTATTCCCCTATGAAACAGTAACTTTGATATTGGCCTGGTTCACTCAGACAACAAAATGTAAACTATATTTGAATGGTTGAGTTTTCGTTTTTCGTTTGATTGAGCCGTGCCAATATCTCAGTTTCTCTTTCACTTTCACTTTCTCT
-------------------------------ATATTGGCCTGGTTCACTCAGA 	5
--------------------------------TATTGGCCTGGTTCACTCAGA 	101
--------------------------------TATTGGCCTGGTTCACTCAG 	3
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	62
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	2021
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	121
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	143
------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	7
-------------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	11


Overlaps with: MNEST041538 MNEST054551
Overlaps with miRBase pre-miRNAs: sly-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Solanum lycopersicum GSM304985 TGATTGAGCCGTGCCAATATC TGTTGGAATGGCTCAATCAAA down 1 0


Secondary structure

AGTTAATAGTATAGTAAAATGATGTTGGAATGGCTCAATCAAATCAAATTTCTCAAAGTATTGGGTCATTTCATTTGATTGAGCCGTGCCAATATCATCTTACTTATATATACTC
------------------ATGATGTTGGAATGGCTCAAT 	1
-------------------TGATGTTGGAATGGCTCAAT 	8
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCAT 	2
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	360
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	2021
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	121
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	143
----------------------------------------------------------------------------GATTGAGCCGTGCCAATATCA 	1
----------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	7
-----------------------------------------------------------------------------ATTGAGCCGTGCCAATATCA 	1
-----------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	11
------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAT 	1
------------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	3
-------------------------------------------------------------------------------TGAGCCGTGCCAATATCATCT 	7
-------------------------------------------------------------------------------TGAGCCGTGCCAATATCATC 	3
--------------------------------------------------------------------------------GAGCCGTGCCAATATCATCT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Solanum lycopersicum GSM304985 TGATTGAGCCGTGCCAATATC TGTTGGTGCGGTTCAATGAGA down 1 0


Secondary structure

AAAAAGGATATGTTTGAAGTTGCAAAGGTATATCATACGAGATGTTGGTGCGGTTCAATGAGAAAGAAGTTGTTGAATAAGTTTTTGACCCTACTTTTTGATTGAGCCGTGCCAATATCACGTGTCACTATTCTGTAAATTCTCTTCCTTTTTTTTTT
---------------------------------------AGATGTTGGTGCGGTTCAATG 	3
--------------------------------------------TTGGTGCGGTTCAATGAGAAAG 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	360
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	2021
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	121
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	143
---------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATCA 	1
---------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	7
----------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATCACG 	1
----------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATCA 	1
----------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	11
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	5
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	25
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	11
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	3
------------------------------------------------------------------------------------------------------TGAGCCGTGCCAATATCACGT 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Solanum lycopersicum GSM304986 TGATTGAGCCGTGCCAATATC TGTTGGAATGGCTCAATCTAA down 2 0


Secondary structure

GAGTTGGTGTGATGTTGGAATGGCTCAATCTAATGAAAGTTTCCAAACATTTTTGGTCATTTTAATTTGATTGAGCCGTGCCAATATCATATCGTCT
------------------------------------------------------------------TTGATTGAGCCGTGCCAATATCA 	1
------------------------------------------------------------------TTGATTGAGCCGTGCCAATATC 	2
------------------------------------------------------------------TTGATTGAGCCGTGCCAAT 	1
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	66
-------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	3196
-------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	343
-------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	554
--------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	2
---------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	1
----------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	14
-----------------------------------------------------------------------TGAGCCGTGCCAATATCATA 	1
-----------------------------------------------------------------------TGAGCCGTGCCAATATCAT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Solanum lycopersicum GSM304986 TGATTGAGCCGTGCCAATATC TGTTGGTGTGGTTCAATTAGA down 0 0


Secondary structure

GATCAACTTGCGATGTTGGTGTGGTTCAATTAGATAACAATCTCCACGTAAAATTATAGAGTTTGTTATTTGATTGAGCCGTGCCAATATCACATGTAAAG
---------------------------------------------------------------------TTGATTGAGCCGTGCCAATATCA 	1
---------------------------------------------------------------------TTGATTGAGCCGTGCCAATATC 	2
---------------------------------------------------------------------TTGATTGAGCCGTGCCAAT 	1
----------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	66
----------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	3196
----------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	343
----------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	554
-----------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	2
------------------------------------------------------------------------ATTGAGCCGTGCCAATATCACA 	1
------------------------------------------------------------------------ATTGAGCCGTGCCAATATCAC 	1
------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	1
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCACA 	1
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	59
-------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	14



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Solanum lycopersicum GSM304986 TGATTGAGCCGTGCCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

ATTATTATTCCCCTATGAAACAGTAACTTTGATATTGGCCTGGTTCACTCAGACAACAAAATGTAAACTATATTTGAATGGTTGAGTTTTCGTTTTTCGTTTGATTGAGCCGTGCCAATATCTCAGTTTCTCTTTCACTTTCACTTTCTCT
-------------------------------ATATTGGCCTGGTTCACTCAGA 	9
-------------------------------ATATTGGCCTGGTTCACTCAG 	1
--------------------------------TATTGGCCTGGTTCACTCAGA 	109
--------------------------------TATTGGCCTGGTTCACTCA 	1
---------------------------------ATTGGCCTGGTTCACTCAGA 	1
----------------------------------------------------------------------------------------------------TTGATTGAGCCGTGCCAATATC 	2
----------------------------------------------------------------------------------------------------TTGATTGAGCCGTGCCAAT 	1
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	51
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	3196
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	343
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	554
------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATCT 	5
------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	2
-------------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	1


Overlaps with: MNEST041538 MNEST054551
Overlaps with miRBase pre-miRNAs: sly-MIR171a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Solanum lycopersicum GSM304986 TGATTGAGCCGTGCCAATATC TGTTGGAATGGCTCAATCAAA down 1 0


Secondary structure

AGTTAATAGTATAGTAAAATGATGTTGGAATGGCTCAATCAAATCAAATTTCTCAAAGTATTGGGTCATTTCATTTGATTGAGCCGTGCCAATATCATCTTACTTATATATACTC
--------------------------------------------------------------------------TTGATTGAGCCGTGCCAATATCA 	1
--------------------------------------------------------------------------TTGATTGAGCCGTGCCAATATC 	2
--------------------------------------------------------------------------TTGATTGAGCCGTGCCAAT 	1
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	66
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	3196
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	343
---------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	554
----------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	2
-----------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	1
------------------------------------------------------------------------------TTGAGCCGTGCCAATATCATC 	2
------------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	14
-------------------------------------------------------------------------------TGAGCCGTGCCAATATCATCT 	6
-------------------------------------------------------------------------------TGAGCCGTGCCAATATCATC 	3
-------------------------------------------------------------------------------TGAGCCGTGCCAATATCAT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Solanum lycopersicum GSM304986 TGATTGAGCCGTGCCAATATC TGTTGGTGCGGTTCAATGAGA down 1 0


Secondary structure

AAAAAGGATATGTTTGAAGTTGCAAAGGTATATCATACGAGATGTTGGTGCGGTTCAATGAGAAAGAAGTTGTTGAATAAGTTTTTGACCCTACTTTTTGATTGAGCCGTGCCAATATCACGTGTCACTATTCTGTAAATTCTCTTCCTTTTTTTTTT
----------------------------------------GATGTTGGTGCGGTTCAATG 	2
----------------------------------------GATGTTGGTGCGGTTCAAT 	1
-----------------------------------------ATGTTGGTGCGGTTCAATGAG 	1
------------------------------------------TGTTGGTGCGGTTCAATGAG 	1
--------------------------------------------TTGGTGCGGTTCAATGAGA 	5
-------------------------------------------------------------------------------------------------TTGATTGAGCCGTGCCAATATCA 	1
-------------------------------------------------------------------------------------------------TTGATTGAGCCGTGCCAATATC 	2
-------------------------------------------------------------------------------------------------TTGATTGAGCCGTGCCAAT 	1
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCA 	66
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	3196
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	343
--------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	554
---------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	2
----------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATCACG 	6
----------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATCAC 	1
----------------------------------------------------------------------------------------------------ATTGAGCCGTGCCAATATC 	1
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACGT 	6
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	71
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	59
-----------------------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	14
------------------------------------------------------------------------------------------------------TGAGCCGTGCCAATATCACGT 	2



HuntMi prediction: true miRNA