miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGATTGAGCCGTGCCAATATC

selected species: Vitis vinifera

24 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458927	TGATTGAGCCGTGCCAATATC	TGTTGGAATGGCTCAATCAAA	down	1	0

Secondary structure

GTGAGTATGAAGAAGGTGGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAGGGTTTTGGGTCCTTTAATCTGATTGAGCCGTGCCAATATCATCATGTTCACTTCTCCTA
-------------------GGATGTTGGAATGGCTCAATCAAA 	1
----------------------TGTTGGAATGGCTCAATCAAA 	8
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	22

Overlaps with: MNEST041630 MNEST054836
Overlaps with miRBase pre-miRNAs: vvi-MIR171i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458927	TGATTGAGCCGTGCCAATATC	TATTGATACGGTTCAATTAGA	down	1	0

Secondary structure

AGATACACGAGATATTGATACGGTTCAATTAGAAAGCTGTGTTCTAAGTTAAGAACTCTGTTGTTTGATTGAGCCGTGCCAATATCACGTCCTAC
-----------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	22
--------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	4

Overlaps with: MNEST041625 MNEST054831
Overlaps with miRBase pre-miRNAs: vvi-MIR171d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458927	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATAAGA	down	1	0

Secondary structure

GGTATTACGGGATATTGGTGCGGTTCAATAAGAAAGCAGTGCTCGCAATCTTTTTGAGTTCTGGTTTTTGATTGAGCCGTGCCAATATCACGTGTCAT
---------GGATATTGGTGCGGTTCAATA 	1
-----------ATATTGGTGCGGTTCAATAAGA 	1
-----------ATATTGGTGCGGTTCAATAAG 	1
--------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	22
-----------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	4

Overlaps with: MNEST041624 MNEST054830
Overlaps with miRBase pre-miRNAs: vvi-MIR171c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458927	TGATTGAGCCGTGCCAATATC	TGTTGGCTCGGTTCACTCAGA	down	2	0

Secondary structure

GGAGTTGAAATAGTTACTGTGATGTTGGCTCGGTTCACTCAGACAAAAAGAAAAAAAGAAAAAACAAACACATATATGCATGCATTTTTCTCTTTTAGCTTTGATTGAGCCGTGCCAATATCTCAGTGCCTTTTCATTTCT
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	22
------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATCT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Vitis vinifera	GSM458927	TGATTGAGCCGTGCCAATATC	TGTTGGGACGGCTCAATCAAA	down	1	0

Secondary structure

GGATACTTGGTGGGAAGCGTGATGTTGGGACGGCTCAATCAAACCAAAGATCTCAATGGTTGAGTCCTTTAATCTGATTGAGCCGTGCCAATATCATGTTCAATACTTCAAATG
-------------------TGATGTTGGGACGGCTCAATC 	2
----------------------TGTTGGGACGGCTCAATCAAA 	2
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	22

Overlaps with: MNEST041622 MNEST054828
Overlaps with miRBase pre-miRNAs: vvi-MIR171a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Vitis vinifera	GSM458927	TGATTGAGCCGTGCCAATATC	TATTGGCCCGGTTCACTCAGA	down	2	0

Secondary structure

TGGCTGCTGCGATATTGGCCCGGTTCACTCAGATACAGGATACACCTACACTTCCAAAGAAAAAAAAAAAGGTGTACTTTTGATTTGATTGAGCCGTGCCAATATCTGAGTTCCC
------------TATTGGCCCGGTTCACTCAGA 	13
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	22
--------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATCT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Vitis vinifera	GSM458930-2718	TGATTGAGCCGTGCCAATATC	TGTTGGAATGGCTCAATCAAA	down	1	0

Secondary structure

GTGAGTATGAAGAAGGTGGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAGGGTTTTGGGTCCTTTAATCTGATTGAGCCGTGCCAATATCATCATGTTCACTTCTCCTA
----------------------TGTTGGAATGGCTCAATCAAA 	11
-----------------------GTTGGAATGGCTCAATCAAAT 	1
---------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	130
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
-------------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	1

Overlaps with: MNEST041630 MNEST054836
Overlaps with miRBase pre-miRNAs: vvi-MIR171i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Vitis vinifera	GSM458930-2718	TGATTGAGCCGTGCCAATATC	TATTGATACGGTTCAATTAGA	down	1	0

Secondary structure

AGATACACGAGATATTGATACGGTTCAATTAGAAAGCTGTGTTCTAAGTTAAGAACTCTGTTGTTTGATTGAGCCGTGCCAATATCACGTCCTAC
-----------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	130
-----------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
-----------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
--------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	3
--------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	1

Overlaps with: MNEST041625 MNEST054831
Overlaps with miRBase pre-miRNAs: vvi-MIR171d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Vitis vinifera	GSM458930-2718	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATAAGA	down	1	0

Secondary structure

GGTATTACGGGATATTGGTGCGGTTCAATAAGAAAGCAGTGCTCGCAATCTTTTTGAGTTCTGGTTTTTGATTGAGCCGTGCCAATATCACGTGTCAT
------ACGGGATATTGGTGCGGTTCAATA 	1
---------GGATATTGGTGCGGTTCAATA 	1
--------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	130
--------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
--------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
-----------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	3
-----------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	1

Overlaps with: MNEST041624 MNEST054830
Overlaps with miRBase pre-miRNAs: vvi-MIR171c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Vitis vinifera	GSM458930-2718	TGATTGAGCCGTGCCAATATC	TGTTGGCTCGGTTCACTCAGA	down	2	0

Secondary structure

GGAGTTGAAATAGTTACTGTGATGTTGGCTCGGTTCACTCAGACAAAAAGAAAAAAAGAAAAAACAAACACATATATGCATGCATTTTTCTCTTTTAGCTTTGATTGAGCCGTGCCAATATCTCAGTGCCTTTTCATTTCT
----------------------TGTTGGCTCGGTTCACTCAGA 	4
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	3
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	130
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Vitis vinifera	GSM458930-2718	TGATTGAGCCGTGCCAATATC	TGTTGGGACGGCTCAATCAAA	down	1	0

Secondary structure

GGATACTTGGTGGGAAGCGTGATGTTGGGACGGCTCAATCAAACCAAAGATCTCAATGGTTGAGTCCTTTAATCTGATTGAGCCGTGCCAATATCATGTTCAATACTTCAAATG
-------------------TGATGTTGGGACGGCTCAATC 	7
----------------------TGTTGGGACGGCTCAATCAAA 	2
-------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	1
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	130
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8
-----------------------------------------------------------------------------TTGAGCCGTGCCAATATCA 	1

Overlaps with: MNEST041622 MNEST054828
Overlaps with miRBase pre-miRNAs: vvi-MIR171a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Vitis vinifera	GSM458930-2718	TGATTGAGCCGTGCCAATATC	TATTGGCCCGGTTCACTCAGA	down	2	0

Secondary structure

TGGCTGCTGCGATATTGGCCCGGTTCACTCAGATACAGGATACACCTACACTTCCAAAGAAAAAAAAAAAGGTGTACTTTTGATTTGATTGAGCCGTGCCAATATCTGAGTTCCC
------------TATTGGCCCGGTTCACTCAGA 	5
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	3
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	130
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	3
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	8

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Vitis vinifera	GSM458929-2717	TGATTGAGCCGTGCCAATATC	TGTTGGAATGGCTCAATCAAA	down	1	0

Secondary structure

GTGAGTATGAAGAAGGTGGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAGGGTTTTGGGTCCTTTAATCTGATTGAGCCGTGCCAATATCATCATGTTCACTTCTCCTA
----------------------TGTTGGAATGGCTCAATCAAA 	5
---------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	2
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	320
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	6
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
-----------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST041630 MNEST054836
Overlaps with miRBase pre-miRNAs: vvi-MIR171i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Vitis vinifera	GSM458929-2717	TGATTGAGCCGTGCCAATATC	TATTGATACGGTTCAATTAGA	down	1	0

Secondary structure

AGATACACGAGATATTGATACGGTTCAATTAGAAAGCTGTGTTCTAAGTTAAGAACTCTGTTGTTTGATTGAGCCGTGCCAATATCACGTCCTAC
-----------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	320
-----------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	6
-----------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
--------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	5
--------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1

Overlaps with: MNEST041625 MNEST054831
Overlaps with miRBase pre-miRNAs: vvi-MIR171d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Vitis vinifera	GSM458929-2717	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATAAGA	down	1	0

Secondary structure

GGTATTACGGGATATTGGTGCGGTTCAATAAGAAAGCAGTGCTCGCAATCTTTTTGAGTTCTGGTTTTTGATTGAGCCGTGCCAATATCACGTGTCAT
--------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	320
--------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	6
--------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
---------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
-----------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	5
-----------------------------------------------------------------------TTGAGCCGTGCCAATATCAC 	1

Overlaps with: MNEST041624 MNEST054830
Overlaps with miRBase pre-miRNAs: vvi-MIR171c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Vitis vinifera	GSM458929-2717	TGATTGAGCCGTGCCAATATC	TGTTGGCTCGGTTCACTCAGA	down	2	0

Secondary structure

GGAGTTGAAATAGTTACTGTGATGTTGGCTCGGTTCACTCAGACAAAAAGAAAAAAAGAAAAAACAAACACATATATGCATGCATTTTTCTCTTTTAGCTTTGATTGAGCCGTGCCAATATCTCAGTGCCTTTTCATTTCT
-------------TTACTGTGATGTTGGCTCGGT 	1
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	2
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	320
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	6
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATCT 	1
------------------------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Vitis vinifera	GSM458929-2717	TGATTGAGCCGTGCCAATATC	TGTTGGGACGGCTCAATCAAA	down	1	0

Secondary structure

GGATACTTGGTGGGAAGCGTGATGTTGGGACGGCTCAATCAAACCAAAGATCTCAATGGTTGAGTCCTTTAATCTGATTGAGCCGTGCCAATATCATGTTCAATACTTCAAATG
-----------------CGTGATGTTGGGACGGCTCAATCA 	1
-------------------TGATGTTGGGACGGCTCAATC 	18
---------------------ATGTTGGGACGGCTCAATCA 	1
----------------------TGTTGGGACGGCTCAATCAAA 	17
----------------------TGTTGGGACGGCTCAATCAA 	3
-------------------------------------------------------------------------CTGATTGAGCCGTGCCAATATC 	2
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	320
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	6
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
---------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3

Overlaps with: MNEST041622 MNEST054828
Overlaps with miRBase pre-miRNAs: vvi-MIR171a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Vitis vinifera	GSM458929-2717	TGATTGAGCCGTGCCAATATC	TATTGGCCCGGTTCACTCAGA	down	2	0

Secondary structure

TGGCTGCTGCGATATTGGCCCGGTTCACTCAGATACAGGATACACCTACACTTCCAAAGAAAAAAAAAAAGGTGTACTTTTGATTTGATTGAGCCGTGCCAATATCTGAGTTCCC
------------TATTGGCCCGGTTCACTCAGA 	15
-------------------------------------------------------------------------------TTGATTTGATTGAGCCGTGCC 	4
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATCT 	2
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	320
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATAT 	6
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	19
--------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATCT 	1
--------------------------------------------------------------------------------------GATTGAGCCGTGCCAATATC 	3
----------------------------------------------------------------------------------------TTGAGCCGTGCCAATATCTGA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Vitis vinifera	GSM458928-2716	TGATTGAGCCGTGCCAATATC	TGTTGGAATGGCTCAATCAAA	down	1	0

Secondary structure

GTGAGTATGAAGAAGGTGGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAGGGTTTTGGGTCCTTTAATCTGATTGAGCCGTGCCAATATCATCATGTTCACTTCTCCTA
----------------------TGTTGGAATGGCTCAATCAAA 	3
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11
----------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2

Overlaps with: MNEST041630 MNEST054836
Overlaps with miRBase pre-miRNAs: vvi-MIR171i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Vitis vinifera	GSM458928-2716	TGATTGAGCCGTGCCAATATC	TATTGATACGGTTCAATTAGA	down	1	0

Secondary structure

AGATACACGAGATATTGATACGGTTCAATTAGAAAGCTGTGTTCTAAGTTAAGAACTCTGTTGTTTGATTGAGCCGTGCCAATATCACGTCCTAC
-----------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11
-----------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2
--------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	1

Overlaps with: MNEST041625 MNEST054831
Overlaps with miRBase pre-miRNAs: vvi-MIR171d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Vitis vinifera	GSM458928-2716	TGATTGAGCCGTGCCAATATC	TATTGGTGCGGTTCAATAAGA	down	1	0

Secondary structure

GGTATTACGGGATATTGGTGCGGTTCAATAAGAAAGCAGTGCTCGCAATCTTTTTGAGTTCTGGTTTTTGATTGAGCCGTGCCAATATCACGTGTCAT
--------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11
--------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2
-----------------------------------------------------------------------TTGAGCCGTGCCAATATCACG 	1

Overlaps with: MNEST041624 MNEST054830
Overlaps with miRBase pre-miRNAs: vvi-MIR171c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Vitis vinifera	GSM458928-2716	TGATTGAGCCGTGCCAATATC	TGTTGGCTCGGTTCACTCAGA	down	2	0

Secondary structure

GGAGTTGAAATAGTTACTGTGATGTTGGCTCGGTTCACTCAGACAAAAAGAAAAAAAGAAAAAACAAACACATATATGCATGCATTTTTCTCTTTTAGCTTTGATTGAGCCGTGCCAATATCTCAGTGCCTTTTCATTTCT
----------------CTGTGATGTTGGCTCGGTT 	1
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11
-----------------------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Vitis vinifera	GSM458928-2716	TGATTGAGCCGTGCCAATATC	TGTTGGGACGGCTCAATCAAA	down	1	0

Secondary structure

GGATACTTGGTGGGAAGCGTGATGTTGGGACGGCTCAATCAAACCAAAGATCTCAATGGTTGAGTCCTTTAATCTGATTGAGCCGTGCCAATATCATGTTCAATACTTCAAATG
-------------------TGATGTTGGGACGGCTCAATCAAA 	1
-------------------TGATGTTGGGACGGCTCAATC 	8
----------------------TGTTGGGACGGCTCAATCAAA 	6
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11
--------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2

Overlaps with: MNEST041622 MNEST054828
Overlaps with miRBase pre-miRNAs: vvi-MIR171a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Vitis vinifera	GSM458928-2716	TGATTGAGCCGTGCCAATATC	TATTGGCCCGGTTCACTCAGA	down	2	0

Secondary structure

TGGCTGCTGCGATATTGGCCCGGTTCACTCAGATACAGGATACACCTACACTTCCAAAGAAAAAAAAAAAGGTGTACTTTTGATTTGATTGAGCCGTGCCAATATCTGAGTTCCC
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATATC 	11
-------------------------------------------------------------------------------------TGATTGAGCCGTGCCAATA 	2

HuntMi prediction: true miRNA