miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGATTGAGCCGTGTCAATATC

selected species: Arabidopsis thaliana



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TGATTGAGCCGTGTCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

GTTTCCGAGAGAGTCCCTCTGATATTGGCCTGGTTCACTCAGATTCTCTTTTACTAACTCATCTGATTGAGCCGTGTCAATATCTCAGTCCTCTCTCGTCGCT
----------------------TATTGGCCTGGTTCACTCAGA 	9
---------------------------------------------------------------TGATTGAGCCGTGTCAATATC 	56
---------------------------------------------------------------TGATTGAGCCGTGTCAATAT 	1
---------------------------------------------------------------TGATTGAGCCGTGTCAATA 	1

Overlaps with: MNEST040059
Overlaps with miRBase pre-miRNAs: ath-MIR170
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304285 TGATTGAGCCGTGTCAATATC TATTGGCCTGGTTCACTCAGA down 2 0


Secondary structure

GTTTCCGAGAGAGTCCCTCTGATATTGGCCTGGTTCACTCAGATTCTCTTTTACTAACTCATCTGATTGAGCCGTGTCAATATCTCAGTCCTCTCTCGTCGCT
----------------------TATTGGCCTGGTTCACTCAGA 	1
----------------------TATTGGCCTGGTTCACTCA 	3
---------------------------------------------------------------TGATTGAGCCGTGTCAATATC 	7
---------------------------------------------------------------TGATTGAGCCGTGTCAATA 	1

Overlaps with: MNEST040059
Overlaps with miRBase pre-miRNAs: ath-MIR170
HuntMi prediction: true miRNA