miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCACTGCCTCTTCCCTGGCT

selected species: Physcomitrella patens



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TGCACTGCCTCTTCCCTGGCT CCAGCGTGAGGCAATGCATG down 4 1


Secondary structure

TTTGCAGGGAAGGGATGATGTGGAAGAGAGAGAGTGGTGGAAGGGAGGGAAGCCAGCGTGAGGCAATGCATGACAACAGCATGCCCAGGAGGTCCTGAGGGTGTTGTCCTCATGCACTGCCTCTTCCCTGGCTTCCCTACATAGCTCGCCATTCTTGTGCTCTGCCACTTTTCTGGATTTCG
----------------------------------------------------CCAGCGTGAGGCAATGCATGA 	1
----------------------------------------------------CCAGCGTGAGGCAATGCATG 	1
------------------------------------------------------------------------ACAACAGCATGCCCAGGAG 	1
-------------------------------------------------------------------------CAACAGCATGCCCAGGAGG 	1
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTT 	1
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	29
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	2

Overlaps with: MNEST039490 MNEST051397
Overlaps with miRBase pre-miRNAs: ppt-MIR408b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 TGCACTGCCTCTTCCCTGGCT CCAGCGTGAGGCAATGCATG down 4 1


Secondary structure

TTTGCAGGGAAGGGATGATGTGGAAGAGAGAGAGTGGTGGAAGGGAGGGAAGCCAGCGTGAGGCAATGCATGACAACAGCATGCCCAGGAGGTCCTGAGGGTGTTGTCCTCATGCACTGCCTCTTCCCTGGCTTCCCTACATAGCTCGCCATTCTTGTGCTCTGCCACTTTTCTGGATTTCG
------------------------------------------------GAAGCCAGCGTGAGGCAATGC 	1
----------------------------------------------------CCAGCGTGAGGCAATGCATG 	1
-----------------------------------------------------CAGCGTGAGGCAATGCATGA 	1
---------------------------------------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	1
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	9

Overlaps with: MNEST039490 MNEST051397
Overlaps with miRBase pre-miRNAs: ppt-MIR408b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115096 TGCACTGCCTCTTCCCTGGCT CCAGCGTGAGGCAATGCATG down 4 1


Secondary structure

TTTGCAGGGAAGGGATGATGTGGAAGAGAGAGAGTGGTGGAAGGGAGGGAAGCCAGCGTGAGGCAATGCATGACAACAGCATGCCCAGGAGGTCCTGAGGGTGTTGTCCTCATGCACTGCCTCTTCCCTGGCTTCCCTACATAGCTCGCCATTCTTGTGCTCTGCCACTTTTCTGGATTTCG
------------------------------------------------GAAGCCAGCGTGAGGCAAT 	1
----------------------------------------------------CCAGCGTGAGGCAATGCATGA 	3
----------------------------------------------------CCAGCGTGAGGCAATGCATG 	10
----------------------------------------------------CCAGCGTGAGGCAATGCAT 	2
-----------------------------------------------------CAGCGTGAGGCAATGCATGA 	3
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTTC 	1
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTT 	1
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	41
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGG 	1

Overlaps with: MNEST039490 MNEST051397
Overlaps with miRBase pre-miRNAs: ppt-MIR408b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313216 TGCACTGCCTCTTCCCTGGCT CCAGCGTGAGGCAATGCATG down 4 1


Secondary structure

TTTGCAGGGAAGGGATGATGTGGAAGAGAGAGAGTGGTGGAAGGGAGGGAAGCCAGCGTGAGGCAATGCATGACAACAGCATGCCCAGGAGGTCCTGAGGGTGTTGTCCTCATGCACTGCCTCTTCCCTGGCTTCCCTACATAGCTCGCCATTCTTGTGCTCTGCCACTTTTCTGGATTTCG
---------------------------GAGAGAGTGGTGGAAGGGAGGGAAG 	1
----------------------------------------------------CCAGCGTGAGGCAATGCATGAC 	2
----------------------------------------------------CCAGCGTGAGGCAATGCATGA 	10
----------------------------------------------------CCAGCGTGAGGCAATGCATG 	8
----------------------------------------------------CCAGCGTGAGGCAATGCAT 	1
-----------------------------------------------------CAGCGTGAGGCAATGCATGA 	18
-----------------------------------------------------CAGCGTGAGGCAATGCATGAC 	10
---------------------------------------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCT 	5
---------------------------------------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	1
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	68
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	5
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTT 	5
------------------------------------------------------------------------------------------------------------------CACTGCCTCTTCCCTGGCT 	1

Overlaps with: MNEST039490 MNEST051397
Overlaps with miRBase pre-miRNAs: ppt-MIR408b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313217 TGCACTGCCTCTTCCCTGGCT CCAGCGTGAGGCAATGCATG down 4 1


Secondary structure

TTTGCAGGGAAGGGATGATGTGGAAGAGAGAGAGTGGTGGAAGGGAGGGAAGCCAGCGTGAGGCAATGCATGACAACAGCATGCCCAGGAGGTCCTGAGGGTGTTGTCCTCATGCACTGCCTCTTCCCTGGCTTCCCTACATAGCTCGCCATTCTTGTGCTCTGCCACTTTTCTGGATTTCG
----------------------------------------------------CCAGCGTGAGGCAATGCATGAC 	9
----------------------------------------------------CCAGCGTGAGGCAATGCATGA 	4
----------------------------------------------------CCAGCGTGAGGCAATGCATG 	12
----------------------------------------------------CCAGCGTGAGGCAATGCAT 	2
-----------------------------------------------------CAGCGTGAGGCAATGCATGA 	21
-----------------------------------------------------CAGCGTGAGGCAATGCATG 	1
-----------------------------------------------------CAGCGTGAGGCAATGCATGAC 	2
--------------------------------------------------------------------------------------------------------------CATGCACTGCCTCTTCCCTGGC 	1
---------------------------------------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCT 	4
---------------------------------------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	4
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGG 	1
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	61
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	4
----------------------------------------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTT 	7
-----------------------------------------------------------------------------------------------------------------GCACTGCCTCTTCCCTGGCT 	1
-------------------------------------------------------------------------------------------------------------------ACTGCCTCTTCCCTGGCTTCC 	1
-------------------------------------------------------------------------------------------------------------------ACTGCCTCTTCCCTGGCTTCCC 	1

Overlaps with: MNEST039490 MNEST051397
Overlaps with miRBase pre-miRNAs: ppt-MIR408b
HuntMi prediction: true miRNA