miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGCCAAAGGAGAGTTGCCCTG

selected species: Arabidopsis thaliana



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TGCCAAAGGAGAGTTGCCCTG GGGCATCTTTCTATTGGCAGG down 2 0


Secondary structure

AAGAGGAAGTTACGATAAGCGGAGCAGTAATAGGGCATCTTTCTATTGGCAGGCGACTTGGCTATTTGTATCTTTTGTGTTCTTGACTATTGGCTATGTCACTTGCCAAAGGAGAGTTGCCCTGTCACTGCTTCCGCTTAAACACAGTCTATA
-------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	5
-------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCC 	1

Overlaps with: MNEST040094 MNEST047017
Overlaps with miRBase pre-miRNAs: ath-MIR399c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 TGCCAAAGGAGAGTTGCCCTG GGGCGCCTCTCCATTGGCAGG down 2 0


Secondary structure

TCACTAGTTTTAGGGCGCCTCTCCATTGGCAGGTCCTTTACTTCCAAATATACACATACATATATGAATATCGAAAATTTCCGATGATCGATTTATAAATGACCTGCCAAAGGAGAGTTGCCCTGAAACTGGTT
------------------------------------------------------------------------------------------------------CCTGCCAAAGGAGAGTTGCCC 	2
--------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	5
--------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCC 	1

Overlaps with: MNEST040093 MNEST047016
Overlaps with miRBase pre-miRNAs: ath-MIR399b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM415785 TGCCAAAGGAGAGTTGCCCTG GGGCATCTTTCTATTGGCAGG down 2 0


Secondary structure

AAGAGGAAGTTACGATAAGCGGAGCAGTAATAGGGCATCTTTCTATTGGCAGGCGACTTGGCTATTTGTATCTTTTGTGTTCTTGACTATTGGCTATGTCACTTGCCAAAGGAGAGTTGCCCTGTCACTGCTTCCGCTTAAACACAGTCTATA
-------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTGT 	1
-------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	6

Overlaps with: MNEST040094 MNEST047017
Overlaps with miRBase pre-miRNAs: ath-MIR399c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM415785 TGCCAAAGGAGAGTTGCCCTG GGGCGCCTCTCCATTGGCAGG down 2 0


Secondary structure

TCACTAGTTTTAGGGCGCCTCTCCATTGGCAGGTCCTTTACTTCCAAATATACACATACATATATGAATATCGAAAATTTCCGATGATCGATTTATAAATGACCTGCCAAAGGAGAGTTGCCCTGAAACTGGTT
--------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	6

Overlaps with: MNEST040093 MNEST047016
Overlaps with miRBase pre-miRNAs: ath-MIR399b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366870 TGCCAAAGGAGAGTTGCCCTG GGGCGCCTCTCCATTGGCAGG down 2 0


Secondary structure

TCACTAGTTTTAGGGCGCCTCTCCATTGGCAGGTCCTTTACTTCCAAATATACACATACATATATGAATATCGAAAATTTCCGATGATCGATTTATAAATGACCTGCCAAAGGAGAGTTGCCCTGAAACTGGTT
---------TTAGGGCGCCTCTCCATTGGC 	1
------------------------------------------------------------------------------------------------------CCTGCCAAAGGAGAGTTGCCC 	1
--------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	5

Overlaps with: MNEST040093 MNEST047016
Overlaps with miRBase pre-miRNAs: ath-MIR399b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM366866 TGCCAAAGGAGAGTTGCCCTG GGGCGCCTCTCCATTGGCAGG down 2 0


Secondary structure

TCACTAGTTTTAGGGCGCCTCTCCATTGGCAGGTCCTTTACTTCCAAATATACACATACATATATGAATATCGAAAATTTCCGATGATCGATTTATAAATGACCTGCCAAAGGAGAGTTGCCCTGAAACTGGTT
------------------------------------------------------------------------------------------------------CCTGCCAAAGGAGAGTTGCC 	1
--------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	7

Overlaps with: MNEST040093 MNEST047016
Overlaps with miRBase pre-miRNAs: ath-MIR399b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM518432-13544 TGCCAAAGGAGAGTTGCCCTG GGGCGCCTCTCCATTGGCAGG down 2 0


Secondary structure

TCACTAGTTTTAGGGCGCCTCTCCATTGGCAGGTCCTTTACTTCCAAATATACACATACATATATGAATATCGAAAATTTCCGATGATCGATTTATAAATGACCTGCCAAAGGAGAGTTGCCCTGAAACTGGTT
------------------------------------------------------------------------------------------------------CCTGCCAAAGGAGAGTTGCC 	1
--------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	13

Overlaps with: MNEST040093 MNEST047016
Overlaps with miRBase pre-miRNAs: ath-MIR399b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM277608 TGCCAAAGGAGAGTTGCCCTG GGGCATCTTTCTATTGGCAGG down 2 0


Secondary structure

AAGAGGAAGTTACGATAAGCGGAGCAGTAATAGGGCATCTTTCTATTGGCAGGCGACTTGGCTATTTGTATCTTTTGTGTTCTTGACTATTGGCTATGTCACTTGCCAAAGGAGAGTTGCCCTGTCACTGCTTCCGCTTAAACACAGTCTATA
-------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	19
----------------------------------------------------------------------------------------------------------CAAAGGAGAGTTGCCCTGT 	1

Overlaps with: MNEST040094 MNEST047017
Overlaps with miRBase pre-miRNAs: ath-MIR399c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM277608 TGCCAAAGGAGAGTTGCCCTG GGGCGCCTCTCCATTGGCAGG down 2 0


Secondary structure

TCACTAGTTTTAGGGCGCCTCTCCATTGGCAGGTCCTTTACTTCCAAATATACACATACATATATGAATATCGAAAATTTCCGATGATCGATTTATAAATGACCTGCCAAAGGAGAGTTGCCCTGAAACTGGTT
--------------------------------------------------------------------------------------------------------TGCCAAAGGAGAGTTGCCCTG 	19

Overlaps with: MNEST040093 MNEST047016
Overlaps with miRBase pre-miRNAs: ath-MIR399b
HuntMi prediction: true miRNA