miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGCCAAAGGAGATTTGCCCGG

selected species: Arabidopsis thaliana



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM424847-4989 TGCCAAAGGAGATTTGCCCGG GGGCAAGATCACCATTGGCAGA down 3 1


Secondary structure

ATATGCATTACAGGGCAAGATCACCATTGGCAGAGATCTATTACTTCATTCTTGCATCATATGCATAAATGTTTGTGGTGAGCTCTCTGCCAAAGGAGATTTGCCCGGTAATTCTCT
------------GGGCAAGATCACCATTGGCAGAGA 	1
------------GGGCAAGATCACCATTGGCAGAG 	1
------------GGGCAAGATCACCATTGGCAGA 	1
--------------------------------------------------------------------------------------CTGCCAAAGGAGATTTGCCCGG 	1
---------------------------------------------------------------------------------------TGCCAAAGGAGATTTGCCCGG 	11

Overlaps with: MNEST040097 MNEST047020
Overlaps with miRBase pre-miRNAs: ath-MIR399f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM366870 TGCCAAAGGAGATTTGCCCGG GGGCAAGATCACCATTGGCAGA down 3 1


Secondary structure

ATATGCATTACAGGGCAAGATCACCATTGGCAGAGATCTATTACTTCATTCTTGCATCATATGCATAAATGTTTGTGGTGAGCTCTCTGCCAAAGGAGATTTGCCCGGTAATTCTCT
---------------------------------------------------------------------------------------TGCCAAAGGAGATTTGCCCGG 	6

Overlaps with: MNEST040097 MNEST047020
Overlaps with miRBase pre-miRNAs: ath-MIR399f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM424848-4990 TGCCAAAGGAGATTTGCCCGG GGGCAAGATCACCATTGGCAGA down 3 1


Secondary structure

ATATGCATTACAGGGCAAGATCACCATTGGCAGAGATCTATTACTTCATTCTTGCATCATATGCATAAATGTTTGTGGTGAGCTCTCTGCCAAAGGAGATTTGCCCGGTAATTCTCT
------------GGGCAAGATCACCATTGGCAGA 	5
--------------------------------------------------------------------------------------CTGCCAAAGGAGATTTGCCCGG 	1
---------------------------------------------------------------------------------------TGCCAAAGGAGATTTGCCCGG 	12

Overlaps with: MNEST040097 MNEST047020
Overlaps with miRBase pre-miRNAs: ath-MIR399f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM518432-13544 TGCCAAAGGAGATTTGCCCGG GGGCAAGATCACCATTGGCAGA down 3 1


Secondary structure

ATATGCATTACAGGGCAAGATCACCATTGGCAGAGATCTATTACTTCATTCTTGCATCATATGCATAAATGTTTGTGGTGAGCTCTCTGCCAAAGGAGATTTGCCCGGTAATTCTCT
------------GGGCAAGATCACCATTGGCAGA 	5
--------------------------------------------------------------------------------------CTGCCAAAGGAGATTTGCCCGG 	1
---------------------------------------------------------------------------------------TGCCAAAGGAGATTTGCCCGG 	29
---------------------------------------------------------------------------------------TGCCAAAGGAGATTTGCCCGGT 	1

Overlaps with: MNEST040097 MNEST047020
Overlaps with miRBase pre-miRNAs: ath-MIR399f
HuntMi prediction: true miRNA