miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCACAACAAAGCTAATAAC

selected species: Physcomitrella patens



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TGCCACAACAAAGCTAATAAC TTTTAGTTTTGTTGTGGGCTGT down 2 1


Secondary structure

TTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCTCTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCACGTCTCTGGC
--------------------------TCGTGTTTTTAGTTTTGTTGT 	4
---------------------------CGTGTTTTTAGTTTTGTTGTG 	7
-----------------------------TGTTTTTAGTTTTGTTGTGGG 	2
-------------------------------TTTTTAGTTTTGTTGTGGGCTGT 	4
-------------------------------TTTTTAGTTTTGTTGTGGGCTG 	11
--------------------------------TTTTAGTTTTGTTGTGGGCTGTA 	1
--------------------------------TTTTAGTTTTGTTGTGGGCTGT 	46
--------------------------------TTTTAGTTTTGTTGTGGGCTG 	73
--------------------------------TTTTAGTTTTGTTGTGGGCT 	2
---------------------------------TTTAGTTTTGTTGTGGGCTGT 	1
---------------------------------TTTAGTTTTGTTGTGGGCTG 	5
-------------------------------------GTTTTGTTGTGGGCTGTAAGGGT 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGTGG 	10
------------------------------------------GTTGTGGGCTGTAAGGGTGG 	1
-------------------------------------------TTGTGGGCTGTAAGGGTGGCTGC 	1
----------------------------------------------TGGGCTGTAAGGGTGGCTGCGGG 	1
------------------------------------------------------AAGGGTGGCTGCGGGAGAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GCTCCTTCCTTCTGCCACAACAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAA 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGC 	18
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAG 	529
--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCTGCCACAACAAAG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAATAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACT 	18
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATA 	16
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAAC 	4678
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAA 	15
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAACT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAAC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACAAAGCTAATAACTCG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAGCTAATAACTCGAC 	4


Overlaps with: MNEST039583 MNEST051452
Overlaps with miRBase pre-miRNAs: ppt-MIR1025
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313212 TGCCACAACAAAGCTAATAAC TTTTAGTTTTGTTGTGGGCTGT down 2 1


Secondary structure

TTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCTCTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCACGTCTCTGGC
--------------------------TCGTGTTTTTAGTTTTGTTGT 	2
---------------------------CGTGTTTTTAGTTTTGTTGTG 	3
-----------------------------TGTTTTTAGTTTTGTTGTGGG 	3
-------------------------------TTTTTAGTTTTGTTGTGGGCTG 	3
-------------------------------TTTTTAGTTTTGTTGTGGGCTGT 	1
-------------------------------TTTTTAGTTTTGTTGTGGGCT 	1
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAA 	2
--------------------------------TTTTAGTTTTGTTGTGGGCT 	59
--------------------------------TTTTAGTTTTGTTGTGGGCTGTA 	6
--------------------------------TTTTAGTTTTGTTGTGGGCTGT 	391
--------------------------------TTTTAGTTTTGTTGTGGGCTG 	467
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAAGG 	1
---------------------------------TTTAGTTTTGTTGTGGGCTGT 	6
---------------------------------TTTAGTTTTGTTGTGGGCTG 	11
---------------------------------TTTAGTTTTGTTGTGGGCTGTA 	3
----------------------------------TTAGTTTTGTTGTGGGCTGT 	3
---------------------------------------TTTGTTGTGGGCTGTAAGGGTGG 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGTGG 	4
----------------------------------------TTGTTGTGGGCTGTAAGGGTG 	2
-------------------------------------------TTGTGGGCTGTAAGGGTGG 	1
-------------------------------------------TTGTGGGCTGTAAGGGTGGCTGC 	2
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGG 	2
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGGA 	1
----------------------------------------------TGGGCTGTAAGGGTGGCTGCGGG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTTCTGCCACAACAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGC 	13
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAG 	240
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAA 	18
--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCTGCCACAACAAAG 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAATAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAATA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGCCACAACAAAGCTAATAA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGCCACAACAAAGCTAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCCACAACAAAGCTAATAAC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACAACAAAGCTAATAAC 	6
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATA 	42
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAA 	31
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAAC 	928
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACT 	8
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAAC 	9
----------------------------------------------------------------------------------------------------------------------------------------------------------------CCACAACAAAGCTAATAAC 	6
-----------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACAAAGCTAATAACT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAGCTAATAACTCGAC 	8
--------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGCTAATAACTCGAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGCTAATAACTCGACT 	3


Overlaps with: MNEST039583 MNEST051452
Overlaps with miRBase pre-miRNAs: ppt-MIR1025
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115095 TGCCACAACAAAGCTAATAAC TTTTAGTTTTGTTGTGGGCTGT down 2 1


Secondary structure

TTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCTCTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCACGTCTCTGGC
---------------------------CGTGTTTTTAGTTTTGTTGTG 	1
-------------------------------TTTTTAGTTTTGTTGTGGGCTGT 	6
-------------------------------TTTTTAGTTTTGTTGTGGGCTG 	13
-------------------------------TTTTTAGTTTTGTTGTGGGCT 	1
--------------------------------TTTTAGTTTTGTTGTGGGCTGT 	12
--------------------------------TTTTAGTTTTGTTGTGGGCTG 	29
--------------------------------TTTTAGTTTTGTTGTGGGCT 	4
---------------------------------TTTAGTTTTGTTGTGGGCTGT 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGTGG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGC 	6
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAG 	69
--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCTGCCACAACAAAGC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACT 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATA 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAAC 	1571
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAA 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAAC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------CCACAACAAAGCTAATAAC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAGCTAATAACTCGAC 	1


Overlaps with: MNEST039583 MNEST051452
Overlaps with miRBase pre-miRNAs: ppt-MIR1025
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313213 TGCCACAACAAAGCTAATAAC TTTTAGTTTTGTTGTGGGCTGT down 2 1


Secondary structure

TTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCTCTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCACGTCTCTGGC
--------------------------TCGTGTTTTTAGTTTTGTTGT 	4
---------------------------CGTGTTTTTAGTTTTGTTGTG 	6
---------------------------CGTGTTTTTAGTTTTGTTGT 	1
-----------------------------TGTTTTTAGTTTTGTTGTGGG 	2
-------------------------------TTTTTAGTTTTGTTGTGGGCTG 	10
-------------------------------TTTTTAGTTTTGTTGTGGGCTGT 	2
--------------------------------TTTTAGTTTTGTTGTGGGCT 	67
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAA 	4
--------------------------------TTTTAGTTTTGTTGTGGGCTGTA 	4
--------------------------------TTTTAGTTTTGTTGTGGGCTGT 	373
--------------------------------TTTTAGTTTTGTTGTGGGCTG 	439
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAAG 	1
---------------------------------TTTAGTTTTGTTGTGGGCTGTAAG 	1
---------------------------------TTTAGTTTTGTTGTGGGCTGTAA 	1
---------------------------------TTTAGTTTTGTTGTGGGCTGT 	6
---------------------------------TTTAGTTTTGTTGTGGGCTG 	9
---------------------------------TTTAGTTTTGTTGTGGGCT 	2
------------------------------------AGTTTTGTTGTGGGCTGTAAGG 	1
---------------------------------------TTTGTTGTGGGCTGTAAGGGTGG 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGTGG 	4
----------------------------------------TTGTTGTGGGCTGTAAGGGTG 	2
-----------------------------------------TGTTGTGGGCTGTAAGGGTGGC 	1
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGG 	2
-----------------------------------------------GGGCTGTAAGGGTGGCTGCGGG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTTCTGCCACAACAAAG 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGCT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGC 	10
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAG 	246
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAA 	28
--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCTGCCACAACAAAG 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGCCACAACAAAGCTAATAAC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGCCACAACAAAGCTAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCCACAACAAAGCTAATAAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACAACAAAGCTAATAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACAACAAAGCTAATA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACAACAAAGCTAATAAC 	5
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATA 	46
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAA 	33
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAAC 	1026
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACT 	8
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAAC 	11
----------------------------------------------------------------------------------------------------------------------------------------------------------------CCACAACAAAGCTAATAAC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAGCTAATAACTCGAC 	13
--------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGCTAATAACTCGACT 	1


Overlaps with: MNEST039583 MNEST051452
Overlaps with miRBase pre-miRNAs: ppt-MIR1025
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313215 TGCCACAACAAAGCTAATAAC TTTTAGTTTTGTTGTGGGCTGT down 2 1


Secondary structure

TTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCTCTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCACGTCTCTGGC
-------------------TGAGGAGTCGTGTTTTTAGTT 	1
--------------------------TCGTGTTTTTAGTTTTGTTGT 	8
---------------------------CGTGTTTTTAGTTTTGTTGTG 	4
-----------------------------TGTTTTTAGTTTTGTTGTGGG 	1
-------------------------------TTTTTAGTTTTGTTGTGGGCTG 	3
-------------------------------TTTTTAGTTTTGTTGTGGGCTGT 	3
--------------------------------TTTTAGTTTTGTTGTGGGC 	2
--------------------------------TTTTAGTTTTGTTGTGGGCT 	42
--------------------------------TTTTAGTTTTGTTGTGGGCTGT 	293
--------------------------------TTTTAGTTTTGTTGTGGGCTG 	202
---------------------------------TTTAGTTTTGTTGTGGGCTGT 	3
---------------------------------TTTAGTTTTGTTGTGGGCTG 	11
---------------------------------TTTAGTTTTGTTGTGGGCT 	1
---------------------------------------TTTGTTGTGGGCTGTAAGGGTGG 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGTGG 	5
----------------------------------------TTGTTGTGGGCTGTAAGGGTGGC 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGT 	3
--------------------------------------------TGTGGGCTGTAAGGGTGGCTGCGGG 	1
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGG 	5
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGGAG 	1
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGGA 	1
----------------------------------------------TGGGCTGTAAGGGTGGCTGCGGGA 	1
------------------------------------------------------------------GGGAGAAATTATTATCATTCTG 	1
---------------------------------------------------------------------------------CATTCTGCGGGATGTCCTCTACC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGC 	19
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAG 	140
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAA 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCTGCCACAACAAAG 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAA 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACAACAAAGCTAATAAC 	7
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAAC 	883
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACT 	147
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAACT 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAAC 	6
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAGCTAATAACTCGAC 	20
--------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGCTAATAACTCGACT 	3


Overlaps with: MNEST039583 MNEST051452
Overlaps with miRBase pre-miRNAs: ppt-MIR1025
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115096 TGCCACAACAAAGCTAATAAC TTTTAGTTTTGTTGTGGGCTGT down 2 1


Secondary structure

TTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCTCTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCACGTCTCTGGC
--------------------------TCGTGTTTTTAGTTTTGTTGT 	3
---------------------------CGTGTTTTTAGTTTTGTTGTG 	7
-----------------------------TGTTTTTAGTTTTGTTGTG 	1
-----------------------------TGTTTTTAGTTTTGTTGTGGG 	2
-------------------------------TTTTTAGTTTTGTTGTGGGCTGT 	3
-------------------------------TTTTTAGTTTTGTTGTGGGCTG 	18
--------------------------------TTTTAGTTTTGTTGTGGGCTGT 	53
--------------------------------TTTTAGTTTTGTTGTGGGCTG 	223
--------------------------------TTTTAGTTTTGTTGTGGGCT 	9
---------------------------------TTTAGTTTTGTTGTGGGCT 	3
---------------------------------TTTAGTTTTGTTGTGGGCTG 	11
----------------------------------TTAGTTTTGTTGTGGGCTG 	2
-------------------------------------GTTTTGTTGTGGGCTGTAAGGG 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGTGG 	7
----------------------------------------------TGGGCTGTAAGGGTGGCTGCGGG 	2
------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTTCTGCCACAACAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGC 	11
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAG 	343
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACT 	41
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATA 	32
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAA 	40
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAAC 	4174
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAAC 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------CCACAACAAAGCTAATAAC 	9
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAGCTAATAACTCGAC 	18


Overlaps with: MNEST039583 MNEST051452
Overlaps with miRBase pre-miRNAs: ppt-MIR1025
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313216 TGCCACAACAAAGCTAATAAC TTTTAGTTTTGTTGTGGGCTGT down 2 1


Secondary structure

TTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCTCTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCACGTCTCTGGC
--------------------------TCGTGTTTTTAGTTTTGTTGT 	3
---------------------------CGTGTTTTTAGTTTTGTTGTG 	4
---------------------------CGTGTTTTTAGTTTTGTTGTGG 	1
----------------------------GTGTTTTTAGTTTTGTTGTG 	2
-----------------------------TGTTTTTAGTTTTGTTGTGG 	1
-----------------------------TGTTTTTAGTTTTGTTGTGGG 	3
-----------------------------TGTTTTTAGTTTTGTTGTGGGC 	1
-------------------------------TTTTTAGTTTTGTTGTGGGCTG 	5
-------------------------------TTTTTAGTTTTGTTGTGGGCTGT 	1
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAA 	1
--------------------------------TTTTAGTTTTGTTGTGGGC 	6
--------------------------------TTTTAGTTTTGTTGTGGGCTGTA 	8
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAAG 	2
--------------------------------TTTTAGTTTTGTTGTGGGCTGT 	420
--------------------------------TTTTAGTTTTGTTGTGGGCTG 	340
--------------------------------TTTTAGTTTTGTTGTGGGCT 	50
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAAGG 	1
---------------------------------TTTAGTTTTGTTGTGGGCTGTAAGGG 	1
---------------------------------TTTAGTTTTGTTGTGGGCTGT 	7
---------------------------------TTTAGTTTTGTTGTGGGCTG 	12
---------------------------------TTTAGTTTTGTTGTGGGCT 	1
----------------------------------TTAGTTTTGTTGTGGGCTGT 	1
------------------------------------AGTTTTGTTGTGGGCTGTAAGGG 	1
---------------------------------------TTTGTTGTGGGCTGTAAGGGTGG 	4
----------------------------------------TTGTTGTGGGCTGTAAGGGTGG 	32
----------------------------------------TTGTTGTGGGCTGTAAGGGT 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGTG 	7
------------------------------------------GTTGTGGGCTGTAAGGGTGGCTGCGG 	1
-------------------------------------------TTGTGGGCTGTAAGGGTGGCTGC 	2
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGG 	7
----------------------------------------------TGGGCTGTAAGGGTGGCTGCGGG 	5
------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTTCTGCCACAACAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGC 	12
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAG 	110
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAA 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCTGCCACAACAAAG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAATAAC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGCCACAACAAAGCTAATAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGCCACAACAAAGCTAATAAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACAACAAAGCTAATAAC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAAC 	1178
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACT 	17
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAACT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAAC 	11
----------------------------------------------------------------------------------------------------------------------------------------------------------------CCACAACAAAGCTAATAAC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACAAAGCTAATAACT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACAAAGCTAATAACTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACAAAGCTAATAACTCG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAGCTAATAACTCGAC 	13


Overlaps with: MNEST039583 MNEST051452
Overlaps with miRBase pre-miRNAs: ppt-MIR1025
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313217 TGCCACAACAAAGCTAATAAC TTTTAGTTTTGTTGTGGGCTGT down 2 1


Secondary structure

TTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCTCTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCACGTCTCTGGC
-------------------TGAGGAGTCGTGTTTTTAGTT 	1
--------------------------TCGTGTTTTTAGTTTTGTTGT 	3
---------------------------CGTGTTTTTAGTTTTGTTGTG 	4
---------------------------CGTGTTTTTAGTTTTGTTGT 	1
-----------------------------TGTTTTTAGTTTTGTTGTGGG 	4
-----------------------------TGTTTTTAGTTTTGTTGTGGGC 	1
-------------------------------TTTTTAGTTTTGTTGTGGGCTG 	5
-------------------------------TTTTTAGTTTTGTTGTGGGC 	1
-------------------------------TTTTTAGTTTTGTTGTGGGCTGT 	5
--------------------------------TTTTAGTTTTGTTGTGGGCTG 	263
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAA 	1
--------------------------------TTTTAGTTTTGTTGTGGGCTGTA 	4
--------------------------------TTTTAGTTTTGTTGTGGGC 	5
--------------------------------TTTTAGTTTTGTTGTGGGCTGT 	385
--------------------------------TTTTAGTTTTGTTGTGGGCT 	52
--------------------------------TTTTAGTTTTGTTGTGGGCTGTAAGG 	1
---------------------------------TTTAGTTTTGTTGTGGGCTGT 	5
---------------------------------TTTAGTTTTGTTGTGGGCTG 	11
---------------------------------TTTAGTTTTGTTGTGGGCT 	1
---------------------------------TTTAGTTTTGTTGTGGGCTGTAA 	1
----------------------------------TTAGTTTTGTTGTGGGCTG 	1
----------------------------------TTAGTTTTGTTGTGGGCTGT 	1
------------------------------------AGTTTTGTTGTGGGCTGTAAGGG 	3
-------------------------------------GTTTTGTTGTGGGCTGTAAGGG 	1
---------------------------------------TTTGTTGTGGGCTGTAAGGGTG 	4
---------------------------------------TTTGTTGTGGGCTGTAAGGGTGG 	3
----------------------------------------TTGTTGTGGGCTGTAAGGGTGGC 	1
----------------------------------------TTGTTGTGGGCTGTAAGGGTGG 	37
----------------------------------------TTGTTGTGGGCTGTAAGGGT 	3
----------------------------------------TTGTTGTGGGCTGTAAGGGTG 	7
----------------------------------------TTGTTGTGGGCTGTAAGGG 	1
-----------------------------------------TGTTGTGGGCTGTAAGGGTGGC 	2
-------------------------------------------TTGTGGGCTGTAAGGGTGGCTGC 	1
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGGA 	1
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGGG 	4
---------------------------------------------GTGGGCTGTAAGGGTGGCTGCGG 	1
----------------------------------------------TGGGCTGTAAGGGTGGCTGCGGG 	4
------------------------------------------------------AAGGGTGGCTGCGGGAGAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GCTCCTTCCTTCTGCCACAACAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTTCTGCCACAACAAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAA 	5
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAGC 	10
-------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCTGCCACAACAAAG 	102
--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCTGCCACAACAAAG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTGCCACAACAAAGCTAATAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCCACAACAAAGCTAATAAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCCACAACAAAGCTAATAAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATA 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACT 	16
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAACTC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACAACAAAGCTAATAAC 	1073
---------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACAACAAAGCTAATAAC 	10
----------------------------------------------------------------------------------------------------------------------------------------------------------------CCACAACAAAGCTAATAAC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACAAAGCTAATAACTC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAGCTAATAACTCGAC 	12


Overlaps with: MNEST039583 MNEST051452
Overlaps with miRBase pre-miRNAs: ppt-MIR1025
HuntMi prediction: true miRNA