miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCTGGCTCCCTGAATGCCA

selected species: Brachypodium distachyon



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

ATAAGGTAATTAATGGGTGATGTTGCCTTCCTGCCTGGCTCCCTGAATGCCATCTGAGAAGCACACCACCGTGCCTGGCGTGGCTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTGCAGGTACGTCCTCGCTTACTCCCT
------------------------------CTGCCTGGCTCCCTGAATGCCA 	1
------------------------------CTGCCTGGCTCCCTGAATGCC 	6
------------------------------CTGCCTGGCTCCCTGAATGC 	1
-------------------------------TGCCTGGCTCCCTGAATGCCA 	2259
-------------------------------TGCCTGGCTCCCTGAATGCC 	7
--------------------------------GCCTGGCTCCCTGAATGCCA 	3
------------------------------------------------------------------------------------TCCTGGTTGGCATTGAGGGAG 	1
--------------------------------------------------------------------------------------CTGGTTGGCATTGAGGGAGTC 	1
---------------------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGG 	41
---------------------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAG 	1
----------------------------------------------------------------------------------------------CATTGAGGGAGTCATGCAGGG 	2
----------------------------------------------------------------------------------------------CATTGAGGGAGTCATGCAGG 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506621-23192 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

ATAAGGTAATTAATGGGTGATGTTGCCTTCCTGCCTGGCTCCCTGAATGCCATCTGAGAAGCACACCACCGTGCCTGGCGTGGCTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTGCAGGTACGTCCTCGCTTACTCCCT
-------------------------------TGCCTGGCTCCCTGAATGCCA 	33
--------------------------------GCCTGGCTCCCTGAATGCCA 	5
---------------------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGG 	1


HuntMi prediction: true miRNA