miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGCCTGGCTCCCTGAATGCCA

selected species: Oryza sativa



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM571078-22531 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

GGTAGGAGATGGGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTCATTTCCATCT
--------------------CTGCCTGGCTCCCTGAATGCCA 	1
---------------------TGCCTGGCTCCCTGAATGCCA 	29
----------------------GCCTGGCTCCCTGAATGCCA 	4
-----------------------CCTGGCTCCCTGAATGCCATC 	1
----------------------------------GAATGCCATCCGAGAAGCGTGCCGC 	1
------------------------------------------------------------------------------GTTGGCATTGAGGGAGTCATG 	1
----------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGGG 	1
----------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGG 	1

Overlaps with: MNEST041928 MNEST048831
Overlaps with miRBase pre-miRNAs: osa-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520638-18676 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

GGTAGGAGATGGGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTCATTTCCATCT
---------------------TGCCTGGCTCCCTGAATGCCA 	55
----------------------GCCTGGCTCCCTGAATGCCA 	1
--------------------------------CTGAATGCCATCCGAGAAGCG 	1
-------------------------------------------------------------------------------------TTGAGGGAGTCATGCAGGGTT 	1

Overlaps with: MNEST041928 MNEST048831
Overlaps with miRBase pre-miRNAs: osa-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520640-18679 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

GGTAGGAGATGGGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTCATTTCCATCT
--------------------CTGCCTGGCTCCCTGAATGCC 	2
---------------------TGCCTGGCTCCCTGAATGCCA 	67
---------------------TGCCTGGCTCCCTGAATGC 	1
---------------------TGCCTGGCTCCCTGAATGCC 	2
-------------------------------------------------------------------------------TTGGCATTGAGGGAGTCATGCA 	1
----------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGG 	4
-------------------------------------------------------------------------------------TTGAGGGAGTCATGCAGGG 	1

Overlaps with: MNEST041928 MNEST048831
Overlaps with miRBase pre-miRNAs: osa-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM571077-22529 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

GGTAGGAGATGGGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTCATTTCCATCT
---------------------TGCCTGGCTCCCTGAATGCCA 	31
----------------------GCCTGGCTCCCTGAATGCCA 	1
-----------------------CCTGGCTCCCTGAATGCCATC 	1
--------------------------------------------------------------------------------TGGCATTGAGGGAGTCATGC 	1
--------------------------------------------------------------------------------TGGCATTGAGGGAGTCATGCA 	1
----------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGGG 	1
----------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGG 	2
----------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGGGTT 	1
-------------------------------------------------------------------------------------TTGAGGGAGTCATGCAGGGTT 	1

Overlaps with: MNEST041928 MNEST048831
Overlaps with miRBase pre-miRNAs: osa-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520634-18667 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

GGTAGGAGATGGGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTCATTTCCATCT
---------------------TGCCTGGCTCCCTGAATGCCA 	12

Overlaps with: MNEST041928 MNEST048831
Overlaps with miRBase pre-miRNAs: osa-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520636-18672 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

GGTAGGAGATGGGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTCATTTCCATCT
---------------------TGCCTGGCTCCCTGAATGCCA 	12
-------------------------------------------------------------------GCTGCTTCCTGGTTGGCATTGAGG 	1
----------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGG 	1
----------------------------------------------------------------------------------GCATTGAGGGAGTCATGCAGGG 	1
-------------------------------------------------------------------------------------TTGAGGGAGTCATGCAGGGTT 	1

Overlaps with: MNEST041928 MNEST048831
Overlaps with miRBase pre-miRNAs: osa-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM520637-18674 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

GGTAGGAGATGGGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTCATTTCCATCT
--------------------CTGCCTGGCTCCCTGAATGCCA 	1
---------------------TGCCTGGCTCCCTGAATGCCA 	34
---------------------TGCCTGGCTCCCTGAATGC 	3
---------------------TGCCTGGCTCCCTGAATGCC 	1

Overlaps with: MNEST041928 MNEST048831
Overlaps with miRBase pre-miRNAs: osa-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520639-18678 TGCCTGGCTCCCTGAATGCCA GCATTGAGGGAGTCATGCAGG up 2 0


Secondary structure

GGTAGGAGATGGGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTCATTTCCATCT
--------------------CTGCCTGGCTCCCTGAATGC 	1
--------------------CTGCCTGGCTCCCTGAATGCC 	2
---------------------TGCCTGGCTCCCTGAATGCCA 	114
---------------------TGCCTGGCTCCCTGAATGCC 	1
----------------------GCCTGGCTCCCTGAATGCCA 	1
-----------------------CCTGGCTCCCTGAATGCCATC 	1

Overlaps with: MNEST041928 MNEST048831
Overlaps with miRBase pre-miRNAs: osa-MIR160f
HuntMi prediction: true miRNA