miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCTGGCTCCCTGTATGCCA

selected species: Arabidopsis thaliana



29 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
----------GTGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	453
-----------TGCCTGGCTCCCTGTATGCC 	42
-----------TGCCTGGCTCCCTGTATGC 	4
-------------------------------------------------------------------------CGTACAGAGTAGTCAAGCATGA 	2


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304282 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
----------ATGCCTGGCTCCCTGTATGCCA 	1
----------ATGCCTGGCTCCCTGTATGCC 	4
----------ATGCCTGGCTCCCTGTATGC 	4
-----------TGCCTGGCTCCCTGTATGCCA 	453
-----------TGCCTGGCTCCCTGTATGCC 	42
-----------TGCCTGGCTCCCTGTATGC 	4
----------------------------------------------CGAGTATCGATGACCTCCGTGGATG 	1


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM304282 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
----------ATGCCTGGCTCCCTGTATGCCA 	1
----------ATGCCTGGCTCCCTGTATGCC 	4
----------ATGCCTGGCTCCCTGTATGC 	4
-----------TGCCTGGCTCCCTGTATGCCA 	453
-----------TGCCTGGCTCCCTGTATGCC 	42
-----------TGCCTGGCTCCCTGTATGC 	4
-----------------GCTCCCTGTATGCCACGAGTGGA 	1
------------------CTCCCTGTATGCCACGAGTGGA 	4
-------------------TCCCTGTATGCCACGAGTGGAT 	3
-------------------TCCCTGTATGCCACGAGTGGA 	3
--------------------------------------------------------------------------CGTACAAGGAGTCAAGCATGA 	3
--------------------------------------------------------------------------CGTACAAGGAGTCAAGCATG 	1


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM415786-5994 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
----------GTGCCTGGCTCCCTGTATGCC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	81
-----------TGCCTGGCTCCCTGTATGCC 	2
------------GCCTGGCTCCCTGTATGCCA 	3
------------------------------------------------------------------------GCGTACAGAGTAGTCAAGCATG 	3
-------------------------------------------------------------------------CGTACAGAGTAGTCAAGCATGA 	1
---------------------------------------------------------------------------TACAGAGTAGTCAAGCATGACC 	1


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM415786-5994 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
----------ATGCCTGGCTCCCTGTATGCCA 	2
----------ATGCCTGGCTCCCTGTATGCC 	38
-----------TGCCTGGCTCCCTGTATGCCA 	81
-----------TGCCTGGCTCCCTGTATGCC 	2
------------GCCTGGCTCCCTGTATGCCA 	3
-----------------------------------------------------------------------GCGTATGAGGAGCCATGCATA 	71


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM415785 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
-----------TGCCTGGCTCCCTGTATGCCA 	28
------------GCCTGGCTCCCTGTATGCCA 	1


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM415785 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
----------ATGCCTGGCTCCCTGTATGCC 	22
-----------TGCCTGGCTCCCTGTATGCCA 	28
------------GCCTGGCTCCCTGTATGCCA 	1
-----------------------------------------------------------------------GCGTATGAGGAGCCATGCATA 	15
-----------------------------------------------------------------------GCGTATGAGGAGCCATGCAT 	1


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM415785 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
----------ATGCCTGGCTCCCTGTATGCC 	22
-----------TGCCTGGCTCCCTGTATGCCA 	28
------------GCCTGGCTCCCTGTATGCCA 	1
-------------------------------------------------------------------------GCGTACAAGGAGTCAAGCATG 	4
--------------------------------------------------------------------------CGTACAAGGAGTCAAGCATGA 	1


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM366870 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
-----------TGCCTGGCTCCCTGTATGCC 	4
-----------TGCCTGGCTCCCTGTATGCCA 	222
-----------TGCCTGGCTCCCTGTATGC 	1


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM366870 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
----------ATGCCTGGCTCCCTGTATGC 	1
----------ATGCCTGGCTCCCTGTATGCC 	43
-----------TGCCTGGCTCCCTGTATGCC 	4
-----------TGCCTGGCTCCCTGTATGCCA 	222
-----------TGCCTGGCTCCCTGTATGC 	1
-----------------------------------------------------------------------GCGTATGAGGAGCCATGCATA 	1


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Arabidopsis thaliana GSM366870 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
--------TTATGCCTGGCTCCCTGTATG 	2
----------ATGCCTGGCTCCCTGTATGC 	1
----------ATGCCTGGCTCCCTGTATGCC 	43
-----------TGCCTGGCTCCCTGTATGCC 	4
-----------TGCCTGGCTCCCTGTATGCCA 	222
-----------TGCCTGGCTCCCTGTATGC 	1
-------------------------------------------------------------------------GCGTACAAGGAGTCAAGCA 	1
--------------------------------------------------------------------------CGTACAAGGAGTCAAGCATGA 	5


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Arabidopsis thaliana GSM366869 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
-----------TGCCTGGCTCCCTGTATGCC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	154


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Arabidopsis thaliana GSM366869 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
---------TATGCCTGGCTCCCTGTATGCC 	1
----------ATGCCTGGCTCCCTGTATGCC 	27
-----------TGCCTGGCTCCCTGTATGCC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	154
-------------------------TATGCCATATGCTGAGCCCATCGA 	1


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Arabidopsis thaliana GSM366869 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
--------TTATGCCTGGCTCCCTGTATG 	1
---------TATGCCTGGCTCCCTGTATGCC 	1
----------ATGCCTGGCTCCCTGTATGCC 	27
-----------TGCCTGGCTCCCTGTATGCC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	154


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Arabidopsis thaliana GSM304284 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
-----------TGCCTGGCTCCCTGTATGCCA 	98
-----------TGCCTGGCTCCCTGTATGCC 	20
-------------CCTGGCTCCCTGTATGCCA 	1


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Arabidopsis thaliana GSM304284 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
----------ATGCCTGGCTCCCTGTATGCC 	1
----------ATGCCTGGCTCCCTGTATGC 	6
-----------TGCCTGGCTCCCTGTATGCCAT 	2
-----------TGCCTGGCTCCCTGTATGCCA 	98
-----------TGCCTGGCTCCCTGTATGCC 	20
-------------CCTGGCTCCCTGTATGCCA 	1
-----------------------------CCATATGCTGAGCCCATCGAG 	1
-----------------------------------------------------------------------GCGTATGAGGAGCCATGCAT 	1


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Arabidopsis thaliana GSM304284 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
----------ATGCCTGGCTCCCTGTATGCC 	1
----------ATGCCTGGCTCCCTGTATGC 	6
-----------TGCCTGGCTCCCTGTATGCCA 	98
-----------TGCCTGGCTCCCTGTATGCC 	20
-------------CCTGGCTCCCTGTATGCCA 	1
-----------------GCTCCCTGTATGCCACGAGTGGA 	3
------------------CTCCCTGTATGCCACGAGTGGA 	1
-------------------TCCCTGTATGCCACGAGTGGAT 	1
-------------------TCCCTGTATGCCACGAGTGGA 	2
--------------------------------------------------------------------------CGTACAAGGAGTCAAGCATGA 	1


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Arabidopsis thaliana GSM366866 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
---------CGTGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCC 	24
-----------TGCCTGGCTCCCTGTATGCCA 	3610
-----------TGCCTGGCTCCCTGTATGC 	16
------------GCCTGGCTCCCTGTATGCCA 	1
-------------CCTGGCTCCCTGTATGCCA 	9


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Arabidopsis thaliana GSM366866 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
---------TATGCCTGGCTCCCTGTATGC 	5
---------TATGCCTGGCTCCCTGTATGCC 	3
----------ATGCCTGGCTCCCTGTATGC 	4
----------ATGCCTGGCTCCCTGTATGCC 	156
----------ATGCCTGGCTCCCTGTATG 	1
----------ATGCCTGGCTCCCTGTATGCCA 	2
-----------TGCCTGGCTCCCTGTATGCC 	24
-----------TGCCTGGCTCCCTGTATGCCA 	3610
-----------TGCCTGGCTCCCTGTATGC 	16
------------GCCTGGCTCCCTGTATGCCA 	1
-------------CCTGGCTCCCTGTATGCCA 	9
-------------------------TATGCCATATGCTGAGCCCATCGA 	2
-----------------------------------------------------------CCTCCGTGGATGGCGTATGAGGAGC 	1
-----------------------------------------------------------------------GCGTATGAGGAGCCATGCA 	1
-----------------------------------------------------------------------GCGTATGAGGAGCCATGCATA 	5


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Arabidopsis thaliana GSM366866 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
--------TTATGCCTGGCTCCCTGTATG 	6
---------TATGCCTGGCTCCCTGTATGC 	5
---------TATGCCTGGCTCCCTGTATGCC 	3
----------ATGCCTGGCTCCCTGTATGC 	4
----------ATGCCTGGCTCCCTGTATGCC 	156
----------ATGCCTGGCTCCCTGTATG 	1
----------ATGCCTGGCTCCCTGTATGCCA 	2
-----------TGCCTGGCTCCCTGTATGCC 	24
-----------TGCCTGGCTCCCTGTATGCCA 	3610
-----------TGCCTGGCTCCCTGTATGC 	16
------------GCCTGGCTCCCTGTATGCCA 	1
-------------CCTGGCTCCCTGTATGCCA 	9
-------------------TCCCTGTATGCCACGAGTGGA 	2
-----------------------------------------------------------------------TGGCGTACAAGGAGTCAAGCA 	2
-------------------------------------------------------------------------GCGTACAAGGAGTCAAGCA 	2
--------------------------------------------------------------------------CGTACAAGGAGTCAAGCATGA 	58


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Arabidopsis thaliana GSM304283 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
----------GTGCCTGGCTCCCTGTATGCC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	99
-----------TGCCTGGCTCCCTGTATGCC 	4
-------------CCTGGCTCCCTGTATGCCA 	1


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Arabidopsis thaliana GSM304285 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
-----------TGCCTGGCTCCCTGTATGCCA 	47
-----------TGCCTGGCTCCCTGTATGCC 	3
-----------TGCCTGGCTCCCTGTATGC 	3


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Arabidopsis thaliana GSM304285 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
----------ATGCCTGGCTCCCTGTATGCC 	7
-----------TGCCTGGCTCCCTGTATGCCA 	47
-----------TGCCTGGCTCCCTGTATGCC 	3
-----------TGCCTGGCTCCCTGTATGC 	3


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Arabidopsis thaliana GSM304285 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
----------ATGCCTGGCTCCCTGTATGCC 	7
-----------TGCCTGGCTCCCTGTATGCCA 	47
-----------TGCCTGGCTCCCTGTATGCC 	3
-----------TGCCTGGCTCCCTGTATGC 	3
-------------------TCCCTGTATGCCACGAGTGGA 	1


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Arabidopsis thaliana GSM518432-13544 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
-----------TGCCTGGCTCCCTGTATGCC 	31
-----------TGCCTGGCTCCCTGTATGCCA 	889
-----------TGCCTGGCTCCCTGTATGC 	2
-------------CCTGGCTCCCTGTATGCCA 	4


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Arabidopsis thaliana GSM518432-13544 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCATGCATA up 2 0


Secondary structure

TTATATATGTATGCCTGGCTCCCTGTATGCCATATGCTGAGCCCATCGAGTATCGATGACCTCCGTGGATGGCGTATGAGGAGCCATGCATATCCTCATA
---------TATGCCTGGCTCCCTGTATGCC 	2
----------ATGCCTGGCTCCCTGTATGCC 	105
----------ATGCCTGGCTCCCTGTATG 	1
----------ATGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCC 	31
-----------TGCCTGGCTCCCTGTATGCCA 	889
-----------TGCCTGGCTCCCTGTATGC 	2
-------------CCTGGCTCCCTGTATGCCA 	4
-----------------------------------------------------------------------GCGTATGAGGAGCCATGCATA 	3


Overlaps with: MNEST040019 MNEST046934 MNEST047213
Overlaps with miRBase pre-miRNAs: ath-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Arabidopsis thaliana GSM518432-13544 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
--------TTATGCCTGGCTCCCTGTATG 	4
---------TATGCCTGGCTCCCTGTATGCC 	2
----------ATGCCTGGCTCCCTGTATGCC 	105
----------ATGCCTGGCTCCCTGTATG 	1
----------ATGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCC 	31
-----------TGCCTGGCTCCCTGTATGCCA 	889
-----------TGCCTGGCTCCCTGTATGC 	2
-------------CCTGGCTCCCTGTATGCCA 	4
-------------------------------------------------------------------------GCGTACAAGGAGTCAAGCATG 	2
--------------------------------------------------------------------------CGTACAAGGAGTCAAGCATGA 	35
---------------------------------------------------------------------------GTACAAGGAGTCAAGCATGA 	1


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Arabidopsis thaliana GSM277608 TGCCTGGCTCCCTGTATGCCA GCGTACAGAGTAGTCAAGCATG up 3 1


Secondary structure

AATAATAGTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGACCAAAGC
----------GTGCCTGGCTCCCTGTATGCC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	235
------------GCCTGGCTCCCTGTATGCCA 	2


Overlaps with: MNEST040020 MNEST046935 MNEST047338
Overlaps with miRBase pre-miRNAs: ath-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Arabidopsis thaliana GSM277608 TGCCTGGCTCCCTGTATGCCA GCGTACAAGGAGTCAAGCATG up 2 0


Secondary structure

GTTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTGGCGTACAAGGAGTCAAGCATGACCAGAAG
---------TATGCCTGGCTCCCTGTATGCC 	1
----------ATGCCTGGCTCCCTGTATGCC 	16
-----------TGCCTGGCTCCCTGTATGCCA 	235
------------GCCTGGCTCCCTGTATGCCA 	2


Overlaps with: MNEST044804 MNEST045668 MNEST046265 MNEST046629
Overlaps with miRBase pre-miRNAs: ath-MIR160c
HuntMi prediction: true miRNA