miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCTGGCTCCCTGTATGCCA

selected species: Brachypodium distachyon



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

GAGAGACAGAGAGAGACGAAGGTGAAGCTTATGTTGGGATGTGCCTGGCTCCCTGTATGCCACTCATCTATAGCAACATTCCTTCCTGATGAGGTTGCCTAGGATGGATGGCGTGCACGGAGCCAAGCATATCCCCCTTGATCCCAACCGTCTCTTCTCATGCATTCTC
----------------CGAAGGTGAAGCTTATGTTGGGATG 	2
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	991
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	10
-----------------------------------------TGCCTGGCTCCCTGTATGC 	10
-------------------------------------------CCTGGCTCCCTGTATGCCACTC 	1
-------------------------------------------CCTGGCTCCCTGTATGCCACT 	1
-------------------------------------------CCTGGCTCCCTGTATGCCA 	1
--------------------------------------------CTGGCTCCCTGTATGCCACTC 	3
--------------------------------------------CTGGCTCCCTGTATGCCACT 	1
-------------------------------------------------TCCCTGTATGCCACTCATCTA 	2
--------------------------------------------------------------------------------------------------------------GCGTGCACGGAGCCAAGCATA 	1


Overlaps with: MNEST041734
Overlaps with miRBase pre-miRNAs: bdi-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

AGACTGTGCTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAGCCCATGAATGTGGTTTGCCTGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCATTACGC
-----------TGCCTGGCTCCCTGTATGCCA 	991
-----------TGCCTGGCTCCCTGTATGCC 	10
-----------TGCCTGGCTCCCTGTATGC 	10
-------------CCTGGCTCCCTGTATGCCA 	1
----------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	1


Overlaps with: MNEST041733
Overlaps with miRBase pre-miRNAs: bdi-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Brachypodium distachyon GSM506620-12051 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

CATCGGCTGCGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCGATCCGTGCCGAGGTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCATACATA
CATCGGCTGCGTGCCTGGCTCC 	1
---------CGTGCCTGGCTCCCTGTATGC 	16
-----------TGCCTGGCTCCCTGTATGCCA 	991
-----------TGCCTGGCTCCCTGTATGCC 	10
-----------TGCCTGGCTCCCTGTATGC 	10
-------------CCTGGCTCCCTGTATGCCA 	1
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	1


Overlaps with: MNEST041732
Overlaps with miRBase pre-miRNAs: bdi-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Brachypodium distachyon GSM506620-12051 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAATGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACAACTCAGTTTGAGCTCCCCCGGCCCAAACGCAAACGTTGGCTCTACCGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
-----------TGCCTGGCTCCCTGTATGCCA 	991
-----------TGCCTGGCTCCCTGTATGCC 	10
-----------TGCCTGGCTCCCTGTATGC 	10
-------------CCTGGCTCCCTGTATGCCACTC 	1
-------------CCTGGCTCCCTGTATGCCACT 	1
-------------CCTGGCTCCCTGTATGCCA 	1
--------------CTGGCTCCCTGTATGCCACTC 	3
--------------CTGGCTCCCTGTATGCCACT 	1
--------------------CCCTGTATGCCACTCGCGT 	1
---------------------CCTGTATGCCACTCGCGTAGC 	4
----------------------------------------------------------------------------------------------CCGCGGATGGCGTGCGAGGAG 	1
-------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATGA 	59


Overlaps with: MNEST041731
Overlaps with miRBase pre-miRNAs: bdi-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Brachypodium distachyon GSM506621-23192 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

GAGAGACAGAGAGAGACGAAGGTGAAGCTTATGTTGGGATGTGCCTGGCTCCCTGTATGCCACTCATCTATAGCAACATTCCTTCCTGATGAGGTTGCCTAGGATGGATGGCGTGCACGGAGCCAAGCATATCCCCCTTGATCCCAACCGTCTCTTCTCATGCATTCTC
--------------------------------------ATGTGCCTGGCTCCCTGTATGCCA 	2
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	78
------------------------------------------GCCTGGCTCCCTGTATGCCA 	3
------------------------------------------------------------------------------------------------------------TGGCGTGCACGGAGCCAAGCA 	1
--------------------------------------------------------------------------------------------------------------GCGTGCACGGAGCCAAGCATA 	11


Overlaps with: MNEST041734
Overlaps with miRBase pre-miRNAs: bdi-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Brachypodium distachyon GSM506621-23192 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

AGACTGTGCTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAGCCCATGAATGTGGTTTGCCTGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCATTACGC
-----------TGCCTGGCTCCCTGTATGCCA 	78
------------GCCTGGCTCCCTGTATGCCA 	3
----------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCAT 	1
----------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	40


Overlaps with: MNEST041733
Overlaps with miRBase pre-miRNAs: bdi-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Brachypodium distachyon GSM506621-23192 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

CATCGGCTGCGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCGATCCGTGCCGAGGTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCATACATA
---------CGTGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	78
------------GCCTGGCTCCCTGTATGCCA 	3
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCAT 	1
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	40


Overlaps with: MNEST041732
Overlaps with miRBase pre-miRNAs: bdi-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Brachypodium distachyon GSM506621-23192 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAATGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACAACTCAGTTTGAGCTCCCCCGGCCCAAACGCAAACGTTGGCTCTACCGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
-----------TGCCTGGCTCCCTGTATGCCA 	78
------------GCCTGGCTCCCTGTATGCCA 	3
----------------------------------------------------------------------------------------------CCGCGGATGGCGTGCGAGGAG 	2
-------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATGA 	11
-------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATG 	2


Overlaps with: MNEST041731
Overlaps with miRBase pre-miRNAs: bdi-MIR160a
HuntMi prediction: true miRNA