miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGCCTGGCTCCCTGTATGCCA

selected species: Glycine max

19 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM543396	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGTCATGCATG	up	2	0

Secondary structure

TGTTACATTTTAGGTTGTTTTGTGTATAAGCATACTTTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGACCCCATTACAAAGGTGATGGCCTTAGCAAATGGCGTATGAGGAGTCATGCATGCTGTGTTTTGCTCACCAAGCGAAATTAAAAGCTAAAGA
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	21
------------------------------------------------------------------------------------------------------GCGTATGAGGAGTCATGCATG 	19

Overlaps with miRBase pre-miRNAs: gma-MIR160d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM543396	TGCCTGGCTCCCTGTATGCCA	GCGTGCGAGGAGCCATGCATG	up	2	0

Secondary structure

GAGAGATAAATAGGTTAAGTTTGCATTTAGTTATTGTGTGTTACTATTAGCATACTTGGCGTGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCATCAGGACAGTGATGGCCTTAACGAATGGCGTGCGAGGAGCCATGCATGCTGTGTGTTATTATTAATCAAGGGAAAACTAAATTAACTAGTTTCTGTTTTCTACAAA
-------------------------------------------------------------TGCCTGGCTCCCTGTATGCCA 	21

Overlaps with miRBase pre-miRNAs: gma-MIR160e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM543396	TGCCTGGCTCCCTGTATGCCA	GCGTGCGAGGAGCCATGCATG	up	2	0

Secondary structure

TTACTATTAGCATACTTGGCGTGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCATCAGGACAGTGATGGCCTTAACGAATGGCGTGCGAGGAGCCATGCATGTTGTGCGTTATTAATCAA
---------------------TGCCTGGCTCCCTGTATGCCA 	21

Overlaps with miRBase pre-miRNAs: gma-MIR160c gma-MIR160e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM543396	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGTCATGCATG	up	2	0

Secondary structure

TTACATTTTTGGTTTTGTTTTTTGTATTAGCATACATTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGACCCCATCACAATGGTGATGGCCTTATCAAATGGCGTATGAGGAGTCATGCATGCTGTGTTTTGCTCACCAAGGGAATTAAATTAAGCTAAA
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	21
------------------------------------------------------------------------------------------------------GCGTATGAGGAGTCATGCATG 	19

Overlaps with miRBase pre-miRNAs: gma-MIR160f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Glycine max	GSM543396	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGCCAAGCATA	up	2	0

Secondary structure

ATATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGCATATTTCATAT
-----------TGCCTGGCTCCCTGTATGCCA 	21
------------------------------------------------------------------------GCGTATGAGGAGCCAAGCATA 	16

Overlaps with: MNEST003512
Overlaps with miRBase pre-miRNAs: gma-MIR160a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Glycine max	GSM543394	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGTCATGCATG	up	2	0

Secondary structure

TGTTACATTTTAGGTTGTTTTGTGTATAAGCATACTTTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGACCCCATTACAAAGGTGATGGCCTTAGCAAATGGCGTATGAGGAGTCATGCATGCTGTGTTTTGCTCACCAAGCGAAATTAAAAGCTAAAGA
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	38
------------------------------------------------------------------------------------------------------GCGTATGAGGAGTCATGCATG 	15

Overlaps with miRBase pre-miRNAs: gma-MIR160d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Glycine max	GSM543394	TGCCTGGCTCCCTGTATGCCA	GCGTGCGAGGAGCCATGCATG	up	2	0

Secondary structure

GAGAGATAAATAGGTTAAGTTTGCATTTAGTTATTGTGTGTTACTATTAGCATACTTGGCGTGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCATCAGGACAGTGATGGCCTTAACGAATGGCGTGCGAGGAGCCATGCATGCTGTGTGTTATTATTAATCAAGGGAAAACTAAATTAACTAGTTTCTGTTTTCTACAAA
-------------------------------------------------------------TGCCTGGCTCCCTGTATGCCA 	38

Overlaps with miRBase pre-miRNAs: gma-MIR160e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Glycine max	GSM543394	TGCCTGGCTCCCTGTATGCCA	GCGTGCGAGGAGCCATGCATG	up	2	0

Secondary structure

TTACTATTAGCATACTTGGCGTGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCATCAGGACAGTGATGGCCTTAACGAATGGCGTGCGAGGAGCCATGCATGTTGTGCGTTATTAATCAA
---------------------TGCCTGGCTCCCTGTATGCCA 	38

Overlaps with miRBase pre-miRNAs: gma-MIR160c gma-MIR160e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Glycine max	GSM543394	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGTCATGCATG	up	2	0

Secondary structure

TTACATTTTTGGTTTTGTTTTTTGTATTAGCATACATTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGACCCCATCACAATGGTGATGGCCTTATCAAATGGCGTATGAGGAGTCATGCATGCTGTGTTTTGCTCACCAAGGGAATTAAATTAAGCTAAA
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	38
------------------------------------------------------------------------------------------------------GCGTATGAGGAGTCATGCATG 	15

Overlaps with miRBase pre-miRNAs: gma-MIR160f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Glycine max	GSM543394	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGCCAAGCATA	up	2	0

Secondary structure

ATATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGCATATTTCATAT
-----------TGCCTGGCTCCCTGTATGCCA 	38
------------------------------------------------------------------------GCGTATGAGGAGCCAAGCATA 	6

Overlaps with: MNEST003512
Overlaps with miRBase pre-miRNAs: gma-MIR160a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Glycine max	GSM543393	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGTCATGCATG	up	2	0

Secondary structure

TGTTACATTTTAGGTTGTTTTGTGTATAAGCATACTTTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGACCCCATTACAAAGGTGATGGCCTTAGCAAATGGCGTATGAGGAGTCATGCATGCTGTGTTTTGCTCACCAAGCGAAATTAAAAGCTAAAGA
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	28
------------------------------------------------------------------------------------------------------GCGTATGAGGAGTCATGCATG 	25

Overlaps with miRBase pre-miRNAs: gma-MIR160d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Glycine max	GSM543393	TGCCTGGCTCCCTGTATGCCA	GCGTGCGAGGAGCCATGCATG	up	2	0

Secondary structure

GAGAGATAAATAGGTTAAGTTTGCATTTAGTTATTGTGTGTTACTATTAGCATACTTGGCGTGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCATCAGGACAGTGATGGCCTTAACGAATGGCGTGCGAGGAGCCATGCATGCTGTGTGTTATTATTAATCAAGGGAAAACTAAATTAACTAGTTTCTGTTTTCTACAAA
-------------------------------------------------------------TGCCTGGCTCCCTGTATGCCA 	28

Overlaps with miRBase pre-miRNAs: gma-MIR160e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Glycine max	GSM543393	TGCCTGGCTCCCTGTATGCCA	GCGTGCGAGGAGCCATGCATG	up	2	0

Secondary structure

TTACTATTAGCATACTTGGCGTGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCATCAGGACAGTGATGGCCTTAACGAATGGCGTGCGAGGAGCCATGCATGTTGTGCGTTATTAATCAA
---------------------TGCCTGGCTCCCTGTATGCCA 	28

Overlaps with miRBase pre-miRNAs: gma-MIR160c gma-MIR160e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Glycine max	GSM543393	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGTCATGCATG	up	2	0

Secondary structure

TTACATTTTTGGTTTTGTTTTTTGTATTAGCATACATTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGACCCCATCACAATGGTGATGGCCTTATCAAATGGCGTATGAGGAGTCATGCATGCTGTGTTTTGCTCACCAAGGGAATTAAATTAAGCTAAA
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	28
------------------------------------------------------------------------------------------------------GCGTATGAGGAGTCATGCATG 	25

Overlaps with miRBase pre-miRNAs: gma-MIR160f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Glycine max	GSM543393	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGCCAAGCATA	up	2	0

Secondary structure

ATATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGCATATTTCATAT
-----------TGCCTGGCTCCCTGTATGCCA 	28
------------------------------------------------------------------------GCGTATGAGGAGCCAAGCATA 	8

Overlaps with: MNEST003512
Overlaps with miRBase pre-miRNAs: gma-MIR160a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Glycine max	GSM543395	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGTCATGCATG	up	2	0

Secondary structure

TGTTACATTTTAGGTTGTTTTGTGTATAAGCATACTTTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGACCCCATTACAAAGGTGATGGCCTTAGCAAATGGCGTATGAGGAGTCATGCATGCTGTGTTTTGCTCACCAAGCGAAATTAAAAGCTAAAGA
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	43

Overlaps with miRBase pre-miRNAs: gma-MIR160d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Glycine max	GSM543395	TGCCTGGCTCCCTGTATGCCA	GCGTGCGAGGAGCCATGCATG	up	2	0

Secondary structure

GAGAGATAAATAGGTTAAGTTTGCATTTAGTTATTGTGTGTTACTATTAGCATACTTGGCGTGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCATCAGGACAGTGATGGCCTTAACGAATGGCGTGCGAGGAGCCATGCATGCTGTGTGTTATTATTAATCAAGGGAAAACTAAATTAACTAGTTTCTGTTTTCTACAAA
-------------------------------------------------------------TGCCTGGCTCCCTGTATGCCA 	43
--------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCATGCATG 	5

Overlaps with miRBase pre-miRNAs: gma-MIR160e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Glycine max	GSM543395	TGCCTGGCTCCCTGTATGCCA	GCGTGCGAGGAGCCATGCATG	up	2	0

Secondary structure

TTACTATTAGCATACTTGGCGTGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCATCAGGACAGTGATGGCCTTAACGAATGGCGTGCGAGGAGCCATGCATGTTGTGCGTTATTAATCAA
---------------------TGCCTGGCTCCCTGTATGCCA 	43
----------------------------------------------------------------------------------GCGTGCGAGGAGCCATGCATG 	5

Overlaps with miRBase pre-miRNAs: gma-MIR160c gma-MIR160e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Glycine max	GSM543395	TGCCTGGCTCCCTGTATGCCA	GCGTATGAGGAGTCATGCATG	up	2	0

Secondary structure

TTACATTTTTGGTTTTGTTTTTTGTATTAGCATACATTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGACCCCATCACAATGGTGATGGCCTTATCAAATGGCGTATGAGGAGTCATGCATGCTGTGTTTTGCTCACCAAGGGAATTAAATTAAGCTAAA
-----------------------------------------TGCCTGGCTCCCTGTATGCCA 	43

Overlaps with miRBase pre-miRNAs: gma-MIR160f
HuntMi prediction: true miRNA