miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCTGGCTCCCTGTATGCCA

selected species: Oryza sativa



33 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	18
-------------------------------TGCCTGGCTCCCTGTATGC 	4
-------------------------------TGCCTGGCTCCCTGTATGCC 	1
--------------------------------GCCTGGCTCCCTGTATGCCA 	1


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM693280 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCAT
-----------TGCCTGGCTCCCTGTATGCCA 	18
-----------TGCCTGGCTCCCTGTATGC 	4
-----------TGCCTGGCTCCCTGTATGCC 	1
------------GCCTGGCTCCCTGTATGCCA 	1
------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	8
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCAT 	1
----------------------------------------------------------------------------GTGCAAGGAGCCAAGCATG 	1


Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM693280 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATG
---------------------TGCCTGGCTCCCTGTATGCCA 	18
---------------------TGCCTGGCTCCCTGTATGC 	4
---------------------TGCCTGGCTCCCTGTATGCC 	1
----------------------GCCTGGCTCCCTGTATGCCA 	1
----------------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	8
------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCAT 	1
--------------------------------------------------------------------------------------GTGCAAGGAGCCAAGCATG 	1


Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM693280 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
-----------TGCCTGGCTCCCTGTATGCCA 	18
-----------TGCCTGGCTCCCTGTATGC 	4
-----------TGCCTGGCTCCCTGTATGCC 	1
------------GCCTGGCTCCCTGTATGCCA 	1
--------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATG 	2
--------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATGA 	1


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM571078-22531 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	155
-------------------------------TGCCTGGCTCCCTGTATGCC 	2
-------------------------------TGCCTGGCTCCCTGTATGC 	1
--------------------------------GCCTGGCTCCCTGTATGCCA 	11
---------------------------------------------------------------------------GCGAGAGGTTGCCTATGATGGATG 	1
------------------------------------------------------------------------------------------TGATGGATGGCGTGCACGGAG 	1
-------------------------------------------------------------------------------------------------TGGCGTGCACGGAGCCAAGCAT 	1
---------------------------------------------------------------------------------------------------GCGTGCACGGAGCCAAGCATA 	12


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM571078-22531 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCAT
-----------TGCCTGGCTCCCTGTATGCCA 	155
-----------TGCCTGGCTCCCTGTATGCC 	2
-----------TGCCTGGCTCCCTGTATGC 	1
------------GCCTGGCTCCCTGTATGCCA 	11
------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
-------------------------------------------------------------------------GGCGTGCAAGGAGCCAAGCATG 	1
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	52
---------------------------------------------------------------------------CGTGCAAGGAGCCAAGCATG 	1


Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM571078-22531 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATG
---------------------TGCCTGGCTCCCTGTATGCCA 	155
---------------------TGCCTGGCTCCCTGTATGCC 	2
---------------------TGCCTGGCTCCCTGTATGC 	1
----------------------GCCTGGCTCCCTGTATGCCA 	11
----------------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
-----------------------------------------------------------------------------------GGCGTGCAAGGAGCCAAGCATG 	1
------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	52
-------------------------------------------------------------------------------------CGTGCAAGGAGCCAAGCATG 	1


Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM571078-22531 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
----------ATGCCTGGCTCCCTGTATGCC 	2
-----------TGCCTGGCTCCCTGTATGCCA 	155
-----------TGCCTGGCTCCCTGTATGCC 	2
-----------TGCCTGGCTCCCTGTATGC 	1
------------GCCTGGCTCCCTGTATGCCA 	11
--------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATGA 	1


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520638-18676 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	24
-------------------------------TGCCTGGCTCCCTGTATGCC 	1
---------------------------------CCTGGCTCCCTGTATGCCA 	1
---------------------------------CCTGGCTCCCTGTATGCCACT 	1
------------------------------------------------------------------------------------------TGATGGATGGCGTGCACGGAG 	2


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM520638-18676 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCAT
-----------TGCCTGGCTCCCTGTATGCCA 	24
-----------TGCCTGGCTCCCTGTATGCC 	1
-------------CCTGGCTCCCTGTATGCCA 	1
-------------CCTGGCTCCCTGTATGCCACT 	1
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	7
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCA 	1


Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM520638-18676 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATG
---------------------TGCCTGGCTCCCTGTATGCCA 	24
---------------------TGCCTGGCTCCCTGTATGCC 	1
-----------------------CCTGGCTCCCTGTATGCCA 	1
------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	7
------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCA 	1


Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Oryza sativa GSM520638-18676 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
-----------TGCCTGGCTCCCTGTATGCCA 	24
-----------TGCCTGGCTCCCTGTATGCC 	1
-------------CCTGGCTCCCTGTATGCCA 	1
-------------CCTGGCTCCCTGTATGCCACT 	1


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Oryza sativa GSM686040-31373 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	29
-------------------------------TGCCTGGCTCCCTGTATGC 	1
---------------------------------CCTGGCTCCCTGTATGCCACT 	1
------------------------------------------------------------------------------------------TGATGGATGGCGTGCACGGAG 	1
--------------------------------------------------------------------------------------------ATGGATGGCGTGCACGGAGCCAAG 	1
---------------------------------------------------------------------------------------------------GCGTGCACGGAGCCAAGCATA 	1


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Oryza sativa GSM686040-31373 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
----------ATGCCTGGCTCCCTGTATGCCA 	1
-----------TGCCTGGCTCCCTGTATGCCA 	29
-----------TGCCTGGCTCCCTGTATGC 	1
-------------CCTGGCTCCCTGTATGCCACT 	1
--------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATG 	1


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Oryza sativa GSM520640-18679 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	14
-------------------------------TGCCTGGCTCCCTGTATGCC 	1
---------------------------------CCTGGCTCCCTGTATGCCACT 	2
----------------------------------CTGGCTCCCTGTATGCCACT 	2
------------------------------------------------------------------------------------------TGATGGATGGCGTGCACGGAG 	1


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Oryza sativa GSM520640-18679 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCAT
-----------TGCCTGGCTCCCTGTATGCCA 	14
-----------TGCCTGGCTCCCTGTATGCC 	1
-------------CCTGGCTCCCTGTATGCCACT 	2
--------------CTGGCTCCCTGTATGCCACT 	2
------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	3


Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Oryza sativa GSM520640-18679 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATG
---------------------TGCCTGGCTCCCTGTATGCCA 	14
---------------------TGCCTGGCTCCCTGTATGCC 	1
----------------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	3


Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Oryza sativa GSM520640-18679 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
-----------TGCCTGGCTCCCTGTATGCCA 	14
-----------TGCCTGGCTCCCTGTATGCC 	1
-------------CCTGGCTCCCTGTATGCCACT 	2
--------------CTGGCTCCCTGTATGCCACT 	2


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Oryza sativa GSM571077-22529 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	106
-------------------------------TGCCTGGCTCCCTGTATGCC 	2
-------------------------------TGCCTGGCTCCCTGTATGCCAC 	1
--------------------------------GCCTGGCTCCCTGTATGCCA 	5
---------------------------------------------------------------------------------------CTATGATGGATGGCGTGCACGGAG 	1
------------------------------------------------------------------------------------------TGATGGATGGCGTGCACGGAG 	4
--------------------------------------------------------------------------------------------------GGCGTGCACGGAGCCAAGCATA 	1
---------------------------------------------------------------------------------------------------GCGTGCACGGAGCCAAGCATA 	18


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Oryza sativa GSM571077-22529 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCAT
-----------TGCCTGGCTCCCTGTATGCCA 	106
-----------TGCCTGGCTCCCTGTATGCC 	2
-----------TGCCTGGCTCCCTGTATGCCAC 	1
------------GCCTGGCTCCCTGTATGCCA 	5
------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
-------------------------------------------------------------------------GGCGTGCAAGGAGCCAAGCAT 	1
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	72
--------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCA 	1


Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Oryza sativa GSM571077-22529 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATG
---------------------TGCCTGGCTCCCTGTATGCCA 	106
---------------------TGCCTGGCTCCCTGTATGCC 	2
---------------------TGCCTGGCTCCCTGTATGCCAC 	1
----------------------GCCTGGCTCCCTGTATGCCA 	5
----------------------------------------------------------------------------------TGGCGTGCAAGGAGCCAAGCA 	1
-----------------------------------------------------------------------------------GGCGTGCAAGGAGCCAAGCAT 	1
------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCATG 	72
------------------------------------------------------------------------------------GCGTGCAAGGAGCCAAGCA 	1


Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Oryza sativa GSM571077-22529 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
----------ATGCCTGGCTCCCTGTATGCCA 	1
-----------TGCCTGGCTCCCTGTATGCCA 	106
-----------TGCCTGGCTCCCTGTATGCC 	2
-----------TGCCTGGCTCCCTGTATGCCAC 	1
------------GCCTGGCTCCCTGTATGCCA 	5
--------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATG 	5
--------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATGA 	2


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Oryza sativa GSM686039-31370 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	7
-------------------------------TGCCTGGCTCCCTGTATGC 	1
---------------------------------------------------------------------------------------------------GCGTGCACGGAGCCAAGCATA 	2


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Oryza sativa GSM520637-18674 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGC 	1
-------------------------------TGCCTGGCTCCCTGTATGCCA 	11
-------------------------------TGCCTGGCTCCCTGTATGCC 	2


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Oryza sativa GSM520637-18674 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCAT
-----------TGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	11
-----------TGCCTGGCTCCCTGTATGCC 	2


Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Oryza sativa GSM520637-18674 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATG
---------------------TGCCTGGCTCCCTGTATGC 	1
---------------------TGCCTGGCTCCCTGTATGCCA 	11
---------------------TGCCTGGCTCCCTGTATGCC 	2


Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Oryza sativa GSM520637-18674 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
-----------TGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	11
-----------TGCCTGGCTCCCTGTATGCC 	2


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Oryza sativa GSM693279 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	13
-------------------------------TGCCTGGCTCCCTGTATGC 	5
-------------------------------TGCCTGGCTCCCTGTATGCC 	2
--------------------------------GCCTGGCTCCCTGTATGCCA 	1
------------------------------------------------------------------------------------------TGATGGATGGCGTGCACGGAG 	1
---------------------------------------------------------------------------------------------------GCGTGCACGGAGCCAAGCATA 	4


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Oryza sativa GSM693279 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
-----------TGCCTGGCTCCCTGTATGCCA 	13
-----------TGCCTGGCTCCCTGTATGC 	5
-----------TGCCTGGCTCCCTGTATGCC 	2
------------GCCTGGCTCCCTGTATGCCA 	1
--------------------------------------------------------------------------------------------------------------------------GCGTGCGAGGAGCCAAGCATG 	3


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Oryza sativa GSM520639-18678 TGCCTGGCTCCCTGTATGCCA GCGTGCACGGAGCCAAGCATA up 2 0


Secondary structure

ATCTAAAGCAAAGGTGATGATATTGGGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCCCTCCTATTTTCCAACCTTCTCCTA
-------------------------------TGCCTGGCTCCCTGTATGCCA 	21
-------------------------------TGCCTGGCTCCCTGTATGCC 	7
-------------------------------TGCCTGGCTCCCTGTATGC 	1
---------------------------------CCTGGCTCCCTGTATGCCACT 	2
----------------------------------CTGGCTCCCTGTATGCCACT 	1


Overlaps with: MNEST045077 MNEST045499 MNEST046227 MNEST046561
Overlaps with miRBase pre-miRNAs: osa-MIR160c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Oryza sativa GSM520639-18678 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GCTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCAT
-----------TGCCTGGCTCCCTGTATGCCA 	21
-----------TGCCTGGCTCCCTGTATGCC 	7
-----------TGCCTGGCTCCCTGTATGC 	1
-------------CCTGGCTCCCTGTATGCCACT 	2
--------------CTGGCTCCCTGTATGCCACT 	1
------------------------------------------------------------GGATGCTGTGGGTGGCGTGCAAGG 	2
------------------------------------------------------------GGATGCTGTGGGTGGCGTGCAAGGA 	4
---------------------------------------------------------------------------CGTGCAAGGAGCCAAGCATGC 	1


Overlaps with: MNEST041924 MNEST048827
Overlaps with miRBase pre-miRNAs: osa-MIR160b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Oryza sativa GSM520639-18678 TGCCTGGCTCCCTGTATGCCA GCGTGCAAGGAGCCAAGCATG up 2 0


Secondary structure

GTTCAGAAGCTGTGTAGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGCATGCCTGCCTGCATATG
---------------------TGCCTGGCTCCCTGTATGCCA 	21
---------------------TGCCTGGCTCCCTGTATGCC 	7
---------------------TGCCTGGCTCCCTGTATGC 	1
-------------------------------------------------------------------------------------CGTGCAAGGAGCCAAGCATGC 	1


Overlaps with: MNEST041923 MNEST048826
Overlaps with miRBase pre-miRNAs: osa-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Oryza sativa GSM520639-18678 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG up 2 0


Secondary structure

AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
-----------TGCCTGGCTCCCTGTATGCCA 	21
-----------TGCCTGGCTCCCTGTATGCC 	7
-----------TGCCTGGCTCCCTGTATGC 	1
-------------CCTGGCTCCCTGTATGCCACT 	2
--------------CTGGCTCCCTGTATGCCACT 	1
-----------------------------------------------------------------------------------------------------------GCTCTACTGCGGATGGCGTGCGAGGA 	2


Overlaps with: MNEST004526
Overlaps with miRBase pre-miRNAs: osa-MIR160d
HuntMi prediction: true miRNA