miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCTGGCTCCCTGTATGCCA

selected species: Physcomitrella patens



16 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TGCCTGGCTCCCTGTATGCCA CCATACAGGGAGTCAGACAGA up 2 0


Secondary structure

TCAATTTGAAAGGTAAAAGAGTCTGCAGAAATCAATGGGGGAAACTGGCACTGCCTGGCTCCCTGTATGCCACTTGCGAATTTTGGCAAAACTTGTGGCAGGGTACGTAGCTGCCATACAGGGAGTCAGACAGACCTTGCATCTTCCCGGATTCTCATGAAGCTCTTTACCATGTTCTCATT
--------------------------------------------------CTGCCTGGCTCCCTGTATGCC 	21
---------------------------------------------------TGCCTGGCTCCCTGTATGCCAC 	4
---------------------------------------------------TGCCTGGCTCCCTGTATGCCA 	2442
---------------------------------------------------TGCCTGGCTCCCTGTATGC 	12
---------------------------------------------------TGCCTGGCTCCCTGTATGCC 	275
----------------------------------------------------GCCTGGCTCCCTGTATGCCA 	3
----------------------------------------------------GCCTGGCTCCCTGTATGCC 	1
-----------------------------------------------------CCTGGCTCCCTGTATGCCAC 	1
-----------------------------------------------------CCTGGCTCCCTGTATGCCA 	11
-----------------------------------------------------------------------------------------------------------------CCATACAGGGAGTCAGACAGA 	1157
-----------------------------------------------------------------------------------------------------------------CCATACAGGGAGTCAGACA 	14
-----------------------------------------------------------------------------------------------------------------CCATACAGGGAGTCAGACAGAC 	2
-----------------------------------------------------------------------------------------------------------------CCATACAGGGAGTCAGACAG 	242
------------------------------------------------------------------------------------------------------------------CATACAGGGAGTCAGACAGA 	4


Overlaps with: MNEST039459 MNEST051363
Overlaps with miRBase pre-miRNAs: ppt-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115097 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

GGGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCTCC
----------CTGCCTGGCTCCCTGTATGCC 	21
-----------TGCCTGGCTCCCTGTATGCCAC 	4
-----------TGCCTGGCTCCCTGTATGCCA 	2442
-----------TGCCTGGCTCCCTGTATGC 	12
-----------TGCCTGGCTCCCTGTATGCC 	275
------------GCCTGGCTCCCTGTATGCCA 	3
------------GCCTGGCTCCCTGTATGCC 	1
-------------CCTGGCTCCCTGTATGCCACC 	6
-------------CCTGGCTCCCTGTATGCCAC 	1
-------------CCTGGCTCCCTGTATGCCA 	11
---------------TGGCTCCCTGTATGCCACCTG 	1
---------------TGGCTCCCTGTATGCCACCT 	1
---------------TGGCTCCCTGTATGCCACC 	1
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	3
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	67
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGAC 	1
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	509
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	7
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	7
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAG 	1
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	30
---------------------------------------------------------------------------ATCCAGGGAGCCAGACAGA 	1
---------------------------------------------------------------------------ATCCAGGGAGCCAGACAGAC 	1


Overlaps with: MNEST039455 MNEST051359
Overlaps with miRBase pre-miRNAs: ppt-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115097 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

TTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTTTCTCTTGCCTCATC
--------------------CTGCCTGGCTCCCTGTATGCC 	21
---------------------TGCCTGGCTCCCTGTATGCCAC 	4
---------------------TGCCTGGCTCCCTGTATGCCA 	2442
---------------------TGCCTGGCTCCCTGTATGC 	12
---------------------TGCCTGGCTCCCTGTATGCC 	275
----------------------GCCTGGCTCCCTGTATGCCA 	3
----------------------GCCTGGCTCCCTGTATGCC 	1
-----------------------CCTGGCTCCCTGTATGCCACC 	6
-----------------------CCTGGCTCCCTGTATGCCAC 	1
-----------------------CCTGGCTCCCTGTATGCCA 	11
-------------------------TGGCTCCCTGTATGCCACCTG 	1
-------------------------TGGCTCCCTGTATGCCACCT 	1
-------------------------TGGCTCCCTGTATGCCACC 	1
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	3
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	67
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGAC 	1
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	509
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	7
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	7
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAG 	1
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	30
-------------------------------------------------------------------------------------ATCCAGGGAGCCAGACAGA 	1
-------------------------------------------------------------------------------------ATCCAGGGAGCCAGACAGAC 	1


Overlaps with: MNEST039460 MNEST051364
Overlaps with miRBase pre-miRNAs: ppt-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313212 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

GGGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCTCC
----------CTGCCTGGCTCCCTGTATGCC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	51
-----------TGCCTGGCTCCCTGTATGCC 	8
------------GCCTGGCTCCCTGTATGCCA 	3
-------------CCTGGCTCCCTGTATGCCACC 	3
-------------CCTGGCTCCCTGTATGCCAC 	1
--------------CTGGCTCCCTGTATGCCACC 	1
---------------TGGCTCCCTGTATGCCACCT 	1
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	1
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGAC 	3
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	3
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	40
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	1
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	2


Overlaps with: MNEST039455 MNEST051359
Overlaps with miRBase pre-miRNAs: ppt-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313212 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

TTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTTTCTCTTGCCTCATC
--------------------CTGCCTGGCTCCCTGTATGCC 	1
---------------------TGCCTGGCTCCCTGTATGCCA 	51
---------------------TGCCTGGCTCCCTGTATGCC 	8
----------------------GCCTGGCTCCCTGTATGCCA 	3
-----------------------CCTGGCTCCCTGTATGCCACC 	3
-----------------------CCTGGCTCCCTGTATGCCAC 	1
------------------------CTGGCTCCCTGTATGCCACC 	1
-------------------------TGGCTCCCTGTATGCCACCT 	1
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	1
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGAC 	3
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	3
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	40
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	1
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	2


Overlaps with: MNEST039460 MNEST051364
Overlaps with miRBase pre-miRNAs: ppt-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115095 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

GGGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCTCC
----------CTGCCTGGCTCCCTGTATGCC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	92
-----------TGCCTGGCTCCCTGTATGCC 	4
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	37
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	1
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	1


Overlaps with: MNEST039455 MNEST051359
Overlaps with miRBase pre-miRNAs: ppt-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM115095 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

TTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTTTCTCTTGCCTCATC
--------------------CTGCCTGGCTCCCTGTATGCC 	1
---------------------TGCCTGGCTCCCTGTATGCCA 	92
---------------------TGCCTGGCTCCCTGTATGCC 	4
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	37
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	1
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	1


Overlaps with: MNEST039460 MNEST051364
Overlaps with miRBase pre-miRNAs: ppt-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313215 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

GGGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCTCC
GGGAGTGGAACTGCCTGGCTCC 	1
----------CTGCCTGGCTCCCTGTATGCCA 	1
----------CTGCCTGGCTCCCTGTATGCC 	18
-----------TGCCTGGCTCCCTGTATGCCAC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	423
-----------TGCCTGGCTCCCTGTATGC 	9
-----------TGCCTGGCTCCCTGTATGCC 	44
------------GCCTGGCTCCCTGTATGCCAC 	3
------------GCCTGGCTCCCTGTATGCCA 	7
-------------CCTGGCTCCCTGTATGCCA 	1
-------------CCTGGCTCCCTGTATGCCACC 	3
--------------CTGGCTCCCTGTATGCCACCTG 	1
---------------TGGCTCCCTGTATGCCACCTG 	3
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGA 	1
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	1
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	6
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	67
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	11
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	2
---------------------------------------------------------------------------ATCCAGGGAGCCAGACAGAC 	2


Overlaps with: MNEST039455 MNEST051359
Overlaps with miRBase pre-miRNAs: ppt-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313215 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

TTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTTTCTCTTGCCTCATC
--------------------CTGCCTGGCTCCCTGTATGCCA 	1
--------------------CTGCCTGGCTCCCTGTATGCC 	18
---------------------TGCCTGGCTCCCTGTATGCCAC 	1
---------------------TGCCTGGCTCCCTGTATGCCA 	423
---------------------TGCCTGGCTCCCTGTATGC 	9
---------------------TGCCTGGCTCCCTGTATGCC 	44
----------------------GCCTGGCTCCCTGTATGCCAC 	3
----------------------GCCTGGCTCCCTGTATGCCA 	7
-----------------------CCTGGCTCCCTGTATGCCA 	1
-----------------------CCTGGCTCCCTGTATGCCACC 	3
------------------------CTGGCTCCCTGTATGCCACCTG 	1
-------------------------TGGCTCCCTGTATGCCACCTG 	3
--------------------------------------------------GCTTGTCAAAATGATTGCCAGGCTG 	5
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGA 	1
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	1
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	6
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	67
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	11
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	2
-------------------------------------------------------------------------------------ATCCAGGGAGCCAGACAGAC 	2


Overlaps with: MNEST039460 MNEST051364
Overlaps with miRBase pre-miRNAs: ppt-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Physcomitrella patens GSM115096 TGCCTGGCTCCCTGTATGCCA CCATACAGGGAGTCAGACAGA up 2 0


Secondary structure

TCAATTTGAAAGGTAAAAGAGTCTGCAGAAATCAATGGGGGAAACTGGCACTGCCTGGCTCCCTGTATGCCACTTGCGAATTTTGGCAAAACTTGTGGCAGGGTACGTAGCTGCCATACAGGGAGTCAGACAGACCTTGCATCTTCCCGGATTCTCATGAAGCTCTTTACCATGTTCTCATT
--------------------------------------------------CTGCCTGGCTCCCTGTATGCC 	7
---------------------------------------------------TGCCTGGCTCCCTGTATGC 	1
---------------------------------------------------TGCCTGGCTCCCTGTATGCCA 	875
---------------------------------------------------TGCCTGGCTCCCTGTATGCC 	61
----------------------------------------------------GCCTGGCTCCCTGTATGCCA 	4
-----------------------------------------------------CCTGGCTCCCTGTATGCCA 	6
-----------------------------------------------------------------------------------------------------------------CCATACAGGGAGTCAGACAGA 	544
-----------------------------------------------------------------------------------------------------------------CCATACAGGGAGTCAGACAGAC 	4
-----------------------------------------------------------------------------------------------------------------CCATACAGGGAGTCAGACAG 	97
-----------------------------------------------------------------------------------------------------------------CCATACAGGGAGTCAGACA 	6
------------------------------------------------------------------------------------------------------------------CATACAGGGAGTCAGACAGA 	1


Overlaps with: MNEST039459 MNEST051363
Overlaps with miRBase pre-miRNAs: ppt-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Physcomitrella patens GSM115096 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

GGGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCTCC
----------CTGCCTGGCTCCCTGTATGCC 	7
-----------TGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	875
-----------TGCCTGGCTCCCTGTATGCC 	61
------------GCCTGGCTCCCTGTATGCCA 	4
-------------CCTGGCTCCCTGTATGCCACC 	1
-------------CCTGGCTCCCTGTATGCCA 	6
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGAC 	1
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGA 	1
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	4
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGAC 	3
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	65
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	514
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	4
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	13
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	12
---------------------------------------------------------------------------ATCCAGGGAGCCAGACAGAC 	1


Overlaps with: MNEST039455 MNEST051359
Overlaps with miRBase pre-miRNAs: ppt-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Physcomitrella patens GSM115096 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

TTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTTTCTCTTGCCTCATC
--------------------CTGCCTGGCTCCCTGTATGCC 	7
---------------------TGCCTGGCTCCCTGTATGC 	1
---------------------TGCCTGGCTCCCTGTATGCCA 	875
---------------------TGCCTGGCTCCCTGTATGCC 	61
----------------------GCCTGGCTCCCTGTATGCCA 	4
-----------------------CCTGGCTCCCTGTATGCCACC 	1
-----------------------CCTGGCTCCCTGTATGCCA 	6
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGAC 	1
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGA 	1
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	4
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGAC 	3
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	65
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	514
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	4
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	13
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	12
-------------------------------------------------------------------------------------ATCCAGGGAGCCAGACAGAC 	1


Overlaps with: MNEST039460 MNEST051364
Overlaps with miRBase pre-miRNAs: ppt-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Physcomitrella patens GSM313214 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

GGGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCTCC
GGGAGTGGAACTGCCTGGCTCC 	2
--------AACTGCCTGGCTCCCTGTATGCC 	1
---------ACTGCCTGGCTCCCTGTATGCC 	1
----------CTGCCTGGCTCCCTGTATGCCA 	2
----------CTGCCTGGCTCCCTGTATGCC 	22
-----------TGCCTGGCTCCCTGTATGCCAC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	669
-----------TGCCTGGCTCCCTGTATGC 	17
-----------TGCCTGGCTCCCTGTATGCC 	147
------------GCCTGGCTCCCTGTATGCCAC 	1
------------GCCTGGCTCCCTGTATGCC 	3
------------GCCTGGCTCCCTGTATGCCA 	6
-------------CCTGGCTCCCTGTATGCCACC 	9
-------------CCTGGCTCCCTGTATGCCA 	2
---------------TGGCTCCCTGTATGCCACCTG 	5
----------------GGCTCCCTGTATGCCACCTGC 	1
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	2
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	9
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	1
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	94
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	8
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	8


Overlaps with: MNEST039455 MNEST051359
Overlaps with miRBase pre-miRNAs: ppt-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Physcomitrella patens GSM313214 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

TTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTTTCTCTTGCCTCATC
-------------------ACTGCCTGGCTCCCTGTATGCC 	1
--------------------CTGCCTGGCTCCCTGTATGCCA 	2
--------------------CTGCCTGGCTCCCTGTATGCC 	22
---------------------TGCCTGGCTCCCTGTATGCCAC 	1
---------------------TGCCTGGCTCCCTGTATGCCA 	669
---------------------TGCCTGGCTCCCTGTATGC 	17
---------------------TGCCTGGCTCCCTGTATGCC 	147
----------------------GCCTGGCTCCCTGTATGCCAC 	1
----------------------GCCTGGCTCCCTGTATGCC 	3
----------------------GCCTGGCTCCCTGTATGCCA 	6
-----------------------CCTGGCTCCCTGTATGCCACC 	9
-----------------------CCTGGCTCCCTGTATGCCA 	2
-------------------------TGGCTCCCTGTATGCCACCTG 	5
--------------------------GGCTCCCTGTATGCCACCTGC 	1
--------------------------------------------------GCTTGTCAAAATGATTGCCAGGCTG 	1
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	2
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	9
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACA 	1
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	94
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	8
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	8


Overlaps with: MNEST039460 MNEST051364
Overlaps with miRBase pre-miRNAs: ppt-MIR160f
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Physcomitrella patens GSM313217 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

GGGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCTCC
-----TGGAACTGCCTGGCTCCCTGTATGCC 	1
----------CTGCCTGGCTCCCTGTATGC 	1
-----------TGCCTGGCTCCCTGTATGCCA 	70
-----------TGCCTGGCTCCCTGTATGC 	2
-----------TGCCTGGCTCCCTGTATGCCAC 	3
-----------TGCCTGGCTCCCTGTATGCC 	28
------------GCCTGGCTCCCTGTATGCC 	1
------------GCCTGGCTCCCTGTATGCCAC 	1
------------GCCTGGCTCCCTGTATGCCA 	2
-------------CCTGGCTCCCTGTATGCCA 	2
-------------CCTGGCTCCCTGTATGCCACC 	5
--------------CTGGCTCCCTGTATGCCAC 	1
---------------TGGCTCCCTGTATGCCACCTG 	3
---------------TGGCTCCCTGTATGCCACCT 	1
----------------GGCTCCCTGTATGCCACCTGC 	2
----------------------------------------GCTTGCCAAAGTGATTGTCGAGCT 	1
----------------------------------------GCTTGCCAAAGTGATTGTCGAGCTG 	1
----------------------------------------------CAAAGTGATTGTCGAGCTGCATAGCT 	1
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	1
-----------------------------------------------------------------------TGGCATCCAGGGAGCCAGAC 	1
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGAC 	4
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	5
-------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	41
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	2
--------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	2


Overlaps with: MNEST039455 MNEST051359
Overlaps with miRBase pre-miRNAs: ppt-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Physcomitrella patens GSM313217 TGCCTGGCTCCCTGTATGCCA GCATCCAGGGAGCCAGACAGA up 2 0


Secondary structure

TTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTTTCTCTTGCCTCATC
--------------------CTGCCTGGCTCCCTGTATGC 	1
---------------------TGCCTGGCTCCCTGTATGCCA 	70
---------------------TGCCTGGCTCCCTGTATGC 	2
---------------------TGCCTGGCTCCCTGTATGCCAC 	3
---------------------TGCCTGGCTCCCTGTATGCC 	28
----------------------GCCTGGCTCCCTGTATGCC 	1
----------------------GCCTGGCTCCCTGTATGCCAC 	1
----------------------GCCTGGCTCCCTGTATGCCA 	2
-----------------------CCTGGCTCCCTGTATGCCA 	2
-----------------------CCTGGCTCCCTGTATGCCACC 	5
------------------------CTGGCTCCCTGTATGCCAC 	1
-------------------------TGGCTCCCTGTATGCCACCTG 	3
-------------------------TGGCTCCCTGTATGCCACCT 	1
--------------------------GGCTCCCTGTATGCCACCTGC 	2
--------------------------------------------------GCTTGTCAAAATGATTGCCAGGCTG 	20
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGACA 	1
---------------------------------------------------------------------------------TGGCATCCAGGGAGCCAGAC 	1
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGAC 	4
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAG 	5
-----------------------------------------------------------------------------------GCATCCAGGGAGCCAGACAGA 	41
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGA 	2
------------------------------------------------------------------------------------CATCCAGGGAGCCAGACAGAC 	2


Overlaps with: MNEST039460 MNEST051364
Overlaps with miRBase pre-miRNAs: ppt-MIR160f
HuntMi prediction: true miRNA