miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCTGGCTCCCTGTATGCCA

selected species: Solanum lycopersicum



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TGCCTGGCTCCCTGTATGCCA GCGTATAAGGAGCCAAGCATA up 2 0


Secondary structure

TAAGAAGGATGTGCCTGGCTCCCTGTATGCCACACACATTCACCAATTCTTTGATTGACTGATCAGTGGGTGGCGTATAAGGAGCCAAGCATACCACCCGC
-----------TGCCTGGCTCCCTGTATGCCA 	28


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304985 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCAAGCATA up 2 0


Secondary structure

GTACACGTATATGCCTGGCTCCCTGTATGCCATTTGCAAAGCTCACCGTAATATATCGATGGGCCTTGTTGAATGGCGTATGAGGAGCCAAGCATATTCCGATA
-----------TGCCTGGCTCCCTGTATGCCA 	28
--------------CTGGCTCCCTGTATGCCAT 	1
-------------------------------------------------AATATATCGATGGGCCTTGTTGA 	1
----------------------------------------------------ATATCGATGGGCCTTGTTGA 	1
----------------------------------------------------------ATGGGCCTTGTTGAATGGCGTATG 	1
---------------------------------------------------------------------------GCGTATGAGGAGCCAAGCATA 	9
---------------------------------------------------------------------------GCGTATGAGGAGCCAAGCAT 	2

Overlaps with: MNEST041529 MNEST054541
Overlaps with miRBase pre-miRNAs: sly-MIR160a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Solanum lycopersicum GSM304986 TGCCTGGCTCCCTGTATGCCA GCGTATAAGGAGCCAAGCATA up 2 0


Secondary structure

TAAGAAGGATGTGCCTGGCTCCCTGTATGCCACACACATTCACCAATTCTTTGATTGACTGATCAGTGGGTGGCGTATAAGGAGCCAAGCATACCACCCGC
-----------TGCCTGGCTCCCTGTATGCCA 	19
-----------TGCCTGGCTCCCTGTATGCC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Solanum lycopersicum GSM304986 TGCCTGGCTCCCTGTATGCCA GCGTATGAGGAGCCAAGCATA up 2 0


Secondary structure

GTACACGTATATGCCTGGCTCCCTGTATGCCATTTGCAAAGCTCACCGTAATATATCGATGGGCCTTGTTGAATGGCGTATGAGGAGCCAAGCATATTCCGATA
----------ATGCCTGGCTCCCTGTATGCCA 	1
-----------TGCCTGGCTCCCTGTATGCCA 	19
-----------TGCCTGGCTCCCTGTATGCC 	1
---------------------------------------------------TATATCGATGGGCCTTGTTGA 	1
---------------------------------------------------------------------------GCGTATGAGGAGCCAAGCATA 	6

Overlaps with: MNEST041529 MNEST054541
Overlaps with miRBase pre-miRNAs: sly-MIR160a
HuntMi prediction: true miRNA