miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCTGGCTCCCTGTATGCCA

selected species: Vitis vinifera



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458930-2718 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATA up 2 0


Secondary structure

GAAATGGGTTGTGCCTGGCTCCCTGTATGCCACACGTAGAGACCACTCCCTTTCCCGGATTGGCTATTTGCGGGTGGCGTGCGAGGAGCCAAGCATACCCACCAT
-----------TGCCTGGCTCCCTGTATGCCA 	5
--------------------------------------------------------------------------TGGCGTGCGAGGAGCCAAGCA 	1
--------------------------------------------------------------------------TGGCGTGCGAGGAGCCAAG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458930-2718 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCATGCATG up 2 0


Secondary structure

GCATACTTACATGCCTGGCTCCCTGTATGCCATTTGCAAAGTCCACCCGAGGATTGGTAGCCTTCGCGGATGGCGTGCGAGGAGCCATGCATGCATCTTGC
-----------TGCCTGGCTCCCTGTATGCCA 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458929-2717 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATA up 2 0


Secondary structure

GAAATGGGTTGTGCCTGGCTCCCTGTATGCCACACGTAGAGACCACTCCCTTTCCCGGATTGGCTATTTGCGGGTGGCGTGCGAGGAGCCAAGCATACCCACCAT
-----------TGCCTGGCTCCCTGTATGCCA 	7


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458929-2717 TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCATGCATG up 2 0


Secondary structure

GCATACTTACATGCCTGGCTCCCTGTATGCCATTTGCAAAGTCCACCCGAGGATTGGTAGCCTTCGCGGATGGCGTGCGAGGAGCCATGCATGCATCTTGC
-----------TGCCTGGCTCCCTGTATGCCA 	7
------------GCCTGGCTCCCTGTATGCCATT 	1


HuntMi prediction: true miRNA