miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCCTGGCTCCCTGTATGCCG

selected species: Oryza sativa



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGCCTGGCTCCCTGTATGCCG GCGTGCGAGGTGCCAAGCATG up 3 0


Secondary structure

TACTTTGGGTGATTGTGAAGGTGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTCTACATCTCTC
----------------------------------------ATGCCTGGCTCCCTGTATGCCG 	1
-----------------------------------------TGCCTGGCTCCCTGTATGCCG 	21
-----------------------------------------TGCCTGGCTCCCTGTATGC 	4
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	1
-----------------------------------------TGCCTGGCTCCCTGTATGCCGC 	1
--------------------------------------------------------------------------------------------------------------------GCGTGCGAGGTGCCAAGCATGG 	2

Overlaps with: MNEST041927 MNEST048830
Overlaps with miRBase pre-miRNAs: osa-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM571078-22531 TGCCTGGCTCCCTGTATGCCG GCGTGCGAGGTGCCAAGCATG up 3 0


Secondary structure

TACTTTGGGTGATTGTGAAGGTGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTCTACATCTCTC
----------------------------------------ATGCCTGGCTCCCTGTATGCCG 	2
----------------------------------------ATGCCTGGCTCCCTGTATGCC 	2
-----------------------------------------TGCCTGGCTCCCTGTATGCCG 	30
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	2
-----------------------------------------TGCCTGGCTCCCTGTATGC 	1

Overlaps with: MNEST041927 MNEST048830
Overlaps with miRBase pre-miRNAs: osa-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520638-18676 TGCCTGGCTCCCTGTATGCCG GCGTGCGAGGTGCCAAGCATG up 3 0


Secondary structure

TACTTTGGGTGATTGTGAAGGTGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTCTACATCTCTC
-----------------------------------------TGCCTGGCTCCCTGTATGCCG 	17
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	1

Overlaps with: MNEST041927 MNEST048830
Overlaps with miRBase pre-miRNAs: osa-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520640-18679 TGCCTGGCTCCCTGTATGCCG GCGTGCGAGGTGCCAAGCATG up 3 0


Secondary structure

TACTTTGGGTGATTGTGAAGGTGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTCTACATCTCTC
----------------------------------------ATGCCTGGCTCCCTGTATGCCG 	1
-----------------------------------------TGCCTGGCTCCCTGTATGCCG 	36
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	1

Overlaps with: MNEST041927 MNEST048830
Overlaps with miRBase pre-miRNAs: osa-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM571077-22529 TGCCTGGCTCCCTGTATGCCG GCGTGCGAGGTGCCAAGCATG up 3 0


Secondary structure

TACTTTGGGTGATTGTGAAGGTGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTCTACATCTCTC
--------------------------------------ATATGCCTGGCTCCCTGTATGCCG 	1
-----------------------------------------TGCCTGGCTCCCTGTATGCCG 	24
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	2
------------------------------------------GCCTGGCTCCCTGTATGCCG 	3

Overlaps with: MNEST041927 MNEST048830
Overlaps with miRBase pre-miRNAs: osa-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520637-18674 TGCCTGGCTCCCTGTATGCCG GCGTGCGAGGTGCCAAGCATG up 3 0


Secondary structure

TACTTTGGGTGATTGTGAAGGTGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTCTACATCTCTC
-----------------------------------------TGCCTGGCTCCCTGTATGC 	1
-----------------------------------------TGCCTGGCTCCCTGTATGCCG 	20
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	2

Overlaps with: MNEST041927 MNEST048830
Overlaps with miRBase pre-miRNAs: osa-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM693279 TGCCTGGCTCCCTGTATGCCG GCGTGCGAGGTGCCAAGCATG up 3 0


Secondary structure

TACTTTGGGTGATTGTGAAGGTGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTCTACATCTCTC
-----------------------------------------TGCCTGGCTCCCTGTATGCCG 	17
-----------------------------------------TGCCTGGCTCCCTGTATGC 	5
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	2
--------------------------------------------------------------------------------------------------------------------GCGTGCGAGGTGCCAAGCATGG 	1
--------------------------------------------------------------------------------------------------------------------GCGTGCGAGGTGCCAAGCA 	1

Overlaps with: MNEST041927 MNEST048830
Overlaps with miRBase pre-miRNAs: osa-MIR160e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520639-18678 TGCCTGGCTCCCTGTATGCCG GCGTGCGAGGTGCCAAGCATG up 3 0


Secondary structure

TACTTTGGGTGATTGTGAAGGTGATGAAAAGGTAGGGGATATGCCTGGCTCCCTGTATGCCGCTCGCATGGCTGCCAACCCAATGAACTCGATCTCGTTGTTGGCCGCTGCGTACGGCGTGCGAGGTGCCAAGCATGGCCCTCTTCCCTTCTCTCTTTCTCTCTCTACATCTCTC
-----------------------------------------TGCCTGGCTCCCTGTATGCCG 	14
-----------------------------------------TGCCTGGCTCCCTGTATGCC 	7
-----------------------------------------TGCCTGGCTCCCTGTATGC 	1

Overlaps with: MNEST041927 MNEST048830
Overlaps with miRBase pre-miRNAs: osa-MIR160e
HuntMi prediction: true miRNA