miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGCTGCGGATGGGGGCAGTACT

selected species: Drosophila melanogaster



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399106-16287 TGCTGCGGATGGGGGCAGTACT TATTGCACTTTTCACAGCCCG up 4 1


Secondary structure

TCGTTCTAGCCAACAATTTTCTGCTGCGGATGGGGGCAGTACTGTTTTTTTAACATTGAGTATTGCACTTTTCACAGCCCGAAAATGTTAGCAACTGCC
--------------------CTGCTGCGGATGGGGGCAGTAC 	2
--------------------CTGCTGCGGATGGGGGCAGTACTG 	1
--------------------CTGCTGCGGATGGGGGCAGTACT 	6
--------------------CTGCTGCGGATGGGGGCAGTA 	1
---------------------TGCTGCGGATGGGGGCAGTACT 	368
---------------------TGCTGCGGATGGGGGCAGT 	6
---------------------TGCTGCGGATGGGGGCAGTACTG 	116
---------------------TGCTGCGGATGGGGGCAGTACTGT 	2
---------------------TGCTGCGGATGGGGGCAGTA 	23
---------------------TGCTGCGGATGGGGGCAGTAC 	186
----------------------GCTGCGGATGGGGGCAGTACT 	1
-----------------------------------------------------------GTATTGCACTTTTCACAGCCCG 	8
-----------------------------------------------------------GTATTGCACTTTTCACAGCCCGA 	15
------------------------------------------------------------TATTGCACTTTTCACAGCCCGAAA 	2
------------------------------------------------------------TATTGCACTTTTCACAGCCCG 	6
------------------------------------------------------------TATTGCACTTTTCACAGCCCGAA 	2
------------------------------------------------------------TATTGCACTTTTCACAGCCCGA 	127



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM286605-9793 TGCTGCGGATGGGGGCAGTACT TATTGCACTTTTCACAGCCCG up 4 1


Secondary structure

TCGTTCTAGCCAACAATTTTCTGCTGCGGATGGGGGCAGTACTGTTTTTTTAACATTGAGTATTGCACTTTTCACAGCCCGAAAATGTTAGCAACTGCC
-------------------TCTGCTGCGGATGGGGGCAGTA 	2
--------------------CTGCTGCGGATGGGGGCAGTAC 	78
--------------------CTGCTGCGGATGGGGGCAG 	5
--------------------CTGCTGCGGATGGGGGCAGTACT 	90
--------------------CTGCTGCGGATGGGGGCAGTA 	51
--------------------CTGCTGCGGATGGGGGCAGT 	18
---------------------TGCTGCGGATGGGGGCAGTACT 	1909
---------------------TGCTGCGGATGGGGGCAGT 	78
---------------------TGCTGCGGATGGGGGCAGTACTG 	113
---------------------TGCTGCGGATGGGGGCAGTACTGT 	11
---------------------TGCTGCGGATGGGGGCAGTA 	305
---------------------TGCTGCGGATGGGGGCAGTACTGTT 	3
---------------------TGCTGCGGATGGGGGCAGTAC 	776
-----------------------------------------------------------GTATTGCACTTTTCACAGCCCG 	16
-----------------------------------------------------------GTATTGCACTTTTCACAGCCCGA 	13
------------------------------------------------------------TATTGCACTTTTCACAGCCCGAAA 	11
------------------------------------------------------------TATTGCACTTTTCACAGCCCG 	16
------------------------------------------------------------TATTGCACTTTTCACAGCCCGAA 	2
------------------------------------------------------------TATTGCACTTTTCACAGCCCGA 	239



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM322543-14323 TGCTGCGGATGGGGGCAGTACT TATTGCACTTTTCACAGCCCG up 4 1


Secondary structure

TCGTTCTAGCCAACAATTTTCTGCTGCGGATGGGGGCAGTACTGTTTTTTTAACATTGAGTATTGCACTTTTCACAGCCCGAAAATGTTAGCAACTGCC
--------------------CTGCTGCGGATGGGGGCAGTACT 	4
--------------------CTGCTGCGGATGGGGGCAGTA 	2
---------------------TGCTGCGGATGGGGGCAGTACTG 	6
---------------------TGCTGCGGATGGGGGCAGTAC 	21
---------------------TGCTGCGGATGGGGGCAGTACT 	70
------------------------------------------------------------TATTGCACTTTTCACAGCCCGA 	39



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM286607-9796 TGCTGCGGATGGGGGCAGTACT TATTGCACTTTTCACAGCCCG up 4 1


Secondary structure

TCGTTCTAGCCAACAATTTTCTGCTGCGGATGGGGGCAGTACTGTTTTTTTAACATTGAGTATTGCACTTTTCACAGCCCGAAAATGTTAGCAACTGCC
--------------------CTGCTGCGGATGGGGGCAGTAC 	8
--------------------CTGCTGCGGATGGGGGCAG 	2
--------------------CTGCTGCGGATGGGGGCAGTACT 	12
--------------------CTGCTGCGGATGGGGGCAGT 	12
--------------------CTGCTGCGGATGGGGGCAGTA 	36
---------------------TGCTGCGGATGGGGGCAGT 	67
---------------------TGCTGCGGATGGGGGCAGTACT 	768
---------------------TGCTGCGGATGGGGGCAGTA 	79
---------------------TGCTGCGGATGGGGGCAGTAC 	99
---------------------TGCTGCGGATGGGGGCAGTACTG 	25
-----------------------------------------------------------GTATTGCACTTTTCACAGCCCGA 	5
-----------------------------------------------------------GTATTGCACTTTTCACAGCCCG 	1
------------------------------------------------------------TATTGCACTTTTCACAGCCCGAAA 	7
------------------------------------------------------------TATTGCACTTTTCACAGCCCGA 	78
------------------------------------------------------------TATTGCACTTTTCACAGCCCG 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM286604-9792 TGCTGCGGATGGGGGCAGTACT TATTGCACTTTTCACAGCCCG up 4 1


Secondary structure

TCGTTCTAGCCAACAATTTTCTGCTGCGGATGGGGGCAGTACTGTTTTTTTAACATTGAGTATTGCACTTTTCACAGCCCGAAAATGTTAGCAACTGCC
-------------------TCTGCTGCGGATGGGGGCAGTACT 	1
--------------------CTGCTGCGGATGGGGGCAGTAC 	2
--------------------CTGCTGCGGATGGGGGCAG 	7
--------------------CTGCTGCGGATGGGGGCAGTACT 	14
--------------------CTGCTGCGGATGGGGGCAGT 	12
--------------------CTGCTGCGGATGGGGGCAGTA 	5
---------------------TGCTGCGGATGGGGGCAGT 	37
---------------------TGCTGCGGATGGGGGCAGTACT 	736
---------------------TGCTGCGGATGGGGGCAGTA 	125
---------------------TGCTGCGGATGGGGGCAGTAC 	355
---------------------TGCTGCGGATGGGGGCAGTACTG 	108
---------------------TGCTGCGGATGGGGGCAGTACTGT 	4
-----------------------------------------------------------GTATTGCACTTTTCACAGCCCGA 	8
-----------------------------------------------------------GTATTGCACTTTTCACAGCCCG 	5
------------------------------------------------------------TATTGCACTTTTCACAGCCCGAAA 	5
------------------------------------------------------------TATTGCACTTTTCACAGCC 	1
------------------------------------------------------------TATTGCACTTTTCACAGCCCGAA 	5
------------------------------------------------------------TATTGCACTTTTCACAGCCCGA 	295
------------------------------------------------------------TATTGCACTTTTCACAGCCCG 	27



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM399110-16285 TGCTGCGGATGGGGGCAGTACT TATTGCACTTTTCACAGCCCG up 4 1


Secondary structure

TCGTTCTAGCCAACAATTTTCTGCTGCGGATGGGGGCAGTACTGTTTTTTTAACATTGAGTATTGCACTTTTCACAGCCCGAAAATGTTAGCAACTGCC
--------------------CTGCTGCGGATGGGGGCAGTACT 	2
---------------------TGCTGCGGATGGGGGCAGT 	1
---------------------TGCTGCGGATGGGGGCAGTACT 	128
---------------------TGCTGCGGATGGGGGCAGTA 	22
---------------------TGCTGCGGATGGGGGCAGTAC 	52
---------------------TGCTGCGGATGGGGGCAGTACTG 	15
----------------------------------------------TTTTTAACATTGAGTATTGCACTTTT 	2
------------------------------------------------------------TATTGCACTTTTCACAGCCCGAAA 	1
------------------------------------------------------------TATTGCACTTTTCACAGCCCGA 	35
------------------------------------------------------------TATTGCACTTTTCACAGCCCG 	2



HuntMi prediction: true miRNA