miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAAAGTTGGGAGATTGGGG

selected species: Oryza sativa



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGGAAAGTTGGGAGATTGGGG CCAAATTCCCAACTTTTCATC up 1 0


Secondary structure

CATGATGTGATGGAGATGCGATGGAAAGTTGGGAGATTGGGGGAAGTTGTGTGTGAACTAAACGTGGATTGGGGCCCTGTTTAGTTCACATCAATCTTCCTCCAAATTCCCAACTTTTCATCACATCACAATCACATAAA
---------------ATGCGATGGAAAGTTGGGAGATTG 	1
------------------CGATGGAAAGTTGGGAGATTG 	1
---------------------TGGAAAGTTGGGAGATTGGGG 	137
---------------------TGGAAAGTTGGGAGATTGG 	21
---------------------TGGAAAGTTGGGAGATTGGG 	16
---------------------TGGAAAGTTGGGAGATTGGGGGAA 	5
----------------------GGAAAGTTGGGAGATTGGGG 	2
------------------------AAAGTTGGGAGATTGGGGGAA 	5
-------------------------------------TGGGGGAAGTTGTGTGTGAACTAAA 	3
-------------------------------------TGGGGGAAGTTGTGTGTGAACTAA 	1
------------------------------------------GAAGTTGTGTGTGAACTAAACGTGG 	2
------------------------------------------GAAGTTGTGTGTGAACTAAACGTG 	1
-----------------------------------------------------------------------------------------------------CCAAATTCCCAACTTTTCATC 	2


Overlaps with: MNEST004777
Overlaps with miRBase pre-miRNAs: osa-MIR1850
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520638-18676 TGGAAAGTTGGGAGATTGGGG CCAAATTCCCAACTTTTCATC up 1 0


Secondary structure

CATGATGTGATGGAGATGCGATGGAAAGTTGGGAGATTGGGGGAAGTTGTGTGTGAACTAAACGTGGATTGGGGCCCTGTTTAGTTCACATCAATCTTCCTCCAAATTCCCAACTTTTCATCACATCACAATCACATAAA
-------------AGATGCGATGGAAAGTTGGGA 	5
------------------CGATGGAAAGTTGGGAGATTG 	1
---------------------TGGAAAGTTGGGAGATTGGG 	4
---------------------TGGAAAGTTGGGAGATTGG 	1
---------------------TGGAAAGTTGGGAGATTGGGG 	535
---------------------TGGAAAGTTGGGAGATTGGGGG 	3
----------------------GGAAAGTTGGGAGATTGGGG 	3
------------------------AAAGTTGGGAGATTGGGGGAA 	5
------------------------AAAGTTGGGAGATTGGGGGA 	1
-------------------------AAGTTGGGAGATTGGGGGAAG 	2
-------------------------------GGAGATTGGGGGAAGTTGTGTG 	1
---------------------------------------GGGGAAGTTGTGTGTGAACTAAACG 	1
------------------------------------------GAAGTTGTGTGTGAACTAAACGTGGA 	5
------------------------------------------GAAGTTGTGTGTGAACTAAACGTGG 	29
------------------------------------------GAAGTTGTGTGTGAACTAAACGTG 	62
-------------------------------------------AAGTTGTGTGTGAACTAAACG 	1
---------------------------------------------GTTGTGTGTGAACTAAACGTGGAT 	1
----------------------------------------------TTGTGTGTGAACTAAACGTG 	3
-----------------------------------------------TGTGTGTGAACTAAACGTG 	1
--------------------------------------------------------------------------------TTAGTTCACATCAATCTTCCT 	2
-----------------------------------------------------------------------------------------------------CCAAATTCCCAACTTTTCATC 	2


Overlaps with: MNEST004777
Overlaps with miRBase pre-miRNAs: osa-MIR1850
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520636-18672 TGGAAAGTTGGGAGATTGGGG CCAAATTCCCAACTTTTCATC up 1 0


Secondary structure

CATGATGTGATGGAGATGCGATGGAAAGTTGGGAGATTGGGGGAAGTTGTGTGTGAACTAAACGTGGATTGGGGCCCTGTTTAGTTCACATCAATCTTCCTCCAAATTCCCAACTTTTCATCACATCACAATCACATAAA
----ATGTGATGGAGATGCGATGGAAAG 	2
---------------------TGGAAAGTTGGGAGATTGGG 	2
---------------------TGGAAAGTTGGGAGATTGGGG 	55
------------------------AAAGTTGGGAGATTGGGGGAA 	1
-------------------------------GGAGATTGGGGGAAGTTGTGTG 	1
---------------------------------------GGGGAAGTTGTGTGTGAACTAAAC 	1
------------------------------------------GAAGTTGTGTGTGAACTAAACGTGGA 	2
------------------------------------------GAAGTTGTGTGTGAACTAAACGTGG 	24
------------------------------------------GAAGTTGTGTGTGAACTAAACGTG 	14
-------------------------------------------AAGTTGTGTGTGAACTAAACGTGGAT 	1
-------------------------------------------AAGTTGTGTGTGAACTAAACGTGG 	2
-----------------------------------------------------------------------------TGTTTAGTTCACATCAATCTTCCT 	1
-----------------------------------------------------------------------------------------------------CCAAATTCCCAACTTTTCATC 	4


Overlaps with: MNEST004777
Overlaps with miRBase pre-miRNAs: osa-MIR1850
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM693279 TGGAAAGTTGGGAGATTGGGG CCAAATTCCCAACTTTTCATC up 1 0


Secondary structure

CATGATGTGATGGAGATGCGATGGAAAGTTGGGAGATTGGGGGAAGTTGTGTGTGAACTAAACGTGGATTGGGGCCCTGTTTAGTTCACATCAATCTTCCTCCAAATTCCCAACTTTTCATCACATCACAATCACATAAA
--TGATGTGATGGAGATGCGATGGAAA 	1
-----------GGAGATGCGATGGAAAGTTGGGA 	1
------------GAGATGCGATGGAAAGTTGGGAGA 	1
---------------ATGCGATGGAAAGTTGGGAGATTG 	6
----------------TGCGATGGAAAGTTGGGAGA 	1
------------------CGATGGAAAGTTGGGAGATT 	1
------------------CGATGGAAAGTTGGGAGATTG 	1
-------------------GATGGAAAGTTGGGAGATTGG 	1
---------------------TGGAAAGTTGGGAGATTGGGG 	524
---------------------TGGAAAGTTGGGAGATTGGG 	29
---------------------TGGAAAGTTGGGAGATTGG 	29
---------------------TGGAAAGTTGGGAGATTGGGGGAA 	10
---------------------TGGAAAGTTGGGAGATTGGGGGA 	2
----------------------GGAAAGTTGGGAGATTGGGG 	5
----------------------GGAAAGTTGGGAGATTGGGGGAA 	1
----------------------GGAAAGTTGGGAGATTGGG 	1
------------------------AAAGTTGGGAGATTGGGGGAA 	7
------------------------AAAGTTGGGAGATTGGGGGAAGT 	1
-------------------------AAGTTGGGAGATTGGGGGAAG 	1
-------------------------------GGAGATTGGGGGAAGTTGTGTG 	4
-------------------------------GGAGATTGGGGGAAGTTGTGT 	1
------------------------------------TTGGGGGAAGTTGTGTGTGAAC 	1
-------------------------------------TGGGGGAAGTTGTGTGTGAACTAAA 	13
-------------------------------------TGGGGGAAGTTGTGTGTGAACTAA 	3
-------------------------------------TGGGGGAAGTTGTGTGTGAACT 	1
--------------------------------------GGGGGAAGTTGTGTGTGAACTAAAC 	1
------------------------------------------GAAGTTGTGTGTGAACTAAACGTGG 	14
------------------------------------------GAAGTTGTGTGTGAACTAAACGTG 	11
------------------------------------------GAAGTTGTGTGTGAACTAAAC 	2
------------------------------------------GAAGTTGTGTGTGAACTAAACGT 	1
-------------------------------------------AAGTTGTGTGTGAACTAAACGTGG 	4
-------------------------------------------AAGTTGTGTGTGAACTAAACGTGGA 	1
-----------------------------------------------------------------------------------------------------CCAAATTCCCAACTTTTCATC 	2
-----------------------------------------------------------------------------------------------------CCAAATTCCCAACTTTTCA 	1
------------------------------------------------------------------------------------------------------CAAATTCCCAACTTTTCATC 	1


Overlaps with: MNEST004777
Overlaps with miRBase pre-miRNAs: osa-MIR1850
HuntMi prediction: true miRNA