miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAACATGATCGTAAGGGC

selected species: Ciona intestinalis



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TGGAACATGATCGTAAGGGCTG GTCCTTTCCCTTATGTTCCTCT up 5 0


Secondary structure

CATATTGGCATTGGAACATGATCGTAAGGGCTGGCGGTCAGTCCTTTCCCTTATGTTCCTCTGGCTTTAT
----------TTGGAACATGATCGTAAGGGC 	1
----------TTGGAACATGATCGTAAGGG 	2
-----------TGGAACATGATCGTAAGGGCTGG 	10
-----------TGGAACATGATCGTAAGGGCTG 	8855
-----------TGGAACATGATCGTAAGGGCT 	2850
-----------TGGAACATGATCGTAAGGGC 	1604
-----------TGGAACATGATCGTAAGGG 	2876
------------GGAACATGATCGTAAGGGCTG 	6
------------GGAACATGATCGTAAGGGCT 	1
--------------AACATGATCGTAAGGGCTG 	2


Overlaps with: MNEST024951 MNEST024952
Overlaps with miRBase pre-miRNAs: cin-mir-4006e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343284-14444 TGGAACATGATCGTAAGGGCTG GTCCTTTCCCTTATGTTCCTCT up 5 0


Secondary structure

CATATTGGCATTGGAACATGATCGTAAGGGCTGGCGGTCAGTCCTTTCCCTTATGTTCCTCTGGCTTTAT
----------TTGGAACATGATCGTAAGGGCT 	2
----------TTGGAACATGATCGTAAGGGC 	1
-----------TGGAACATGATCGTAAGGGCTGG 	2
-----------TGGAACATGATCGTAAGGGCTG 	2830
-----------TGGAACATGATCGTAAGGGCT 	270
-----------TGGAACATGATCGTAAGGGC 	473
-----------TGGAACATGATCGTAAGGG 	921
------------GGAACATGATCGTAAGGGCTG 	2
-------------GAACATGATCGTAAGGGCTG 	2


Overlaps with: MNEST024951 MNEST024952
Overlaps with miRBase pre-miRNAs: cin-mir-4006e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343286 TGGAACATGATCGTAAGGGC CCTTTCCCTTATGTTCCTCT up 5 0


Secondary structure

CATATTGGCATTGGAACATGATCGTAAGGGCTGGCGGTCAGTCCTTTCCCTTATGTTCCTCTGGCTTTAT
-----------TGGAACATGATCGTAAGGGCT 	1
-----------TGGAACATGATCGTAAGGGC 	1646
-----------TGGAACATGATCGTAAGGG 	33
------------GGAACATGATCGTAAGGGCT 	1
-------------GAACATGATCGTAAGGGCTG 	1


Overlaps with: MNEST024951 MNEST024952
Overlaps with miRBase pre-miRNAs: cin-mir-4006e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343285 TGGAACATGATCGTAAGGGCTG GTCCTTTCCCTTATGTTCCTCT up 5 0


Secondary structure

CATATTGGCATTGGAACATGATCGTAAGGGCTGGCGGTCAGTCCTTTCCCTTATGTTCCTCTGGCTTTAT
-----------TGGAACATGATCGTAAGGGCTG 	12
-----------TGGAACATGATCGTAAGGGCT 	1
-----------TGGAACATGATCGTAAGGGC 	3
-----------TGGAACATGATCGTAAGGG 	1


Overlaps with: MNEST024951 MNEST024952
Overlaps with miRBase pre-miRNAs: cin-mir-4006e
HuntMi prediction: true miRNA