miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAACATGCAGGTAAGGGC

selected species: Ciona intestinalis



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343286 TGGAACATGCAGGTAAGGGC CCTTAACTGTCTGTTTAAAA up 4 0


Secondary structure

TTACATATAGCGCTTCATGTTCATAAAAGTTTGGAACATGCAGGTAAGGGCTGTTTCCCCAACCCTTAACTGTCTGTTTAAAACTTTTATAGGACGATACCGTTTAAATTT
------------------------------TTGGAACATGCAGGTAAGGG 	1
-------------------------------TGGAACATGCAGGTAAGGGC 	383
-------------------------------TGGAACATGCAGGTAAGGG 	10
--------------------------------GGAACATGCAGGTAAGGGCT 	1

Overlaps with: MNEST024953 MNEST024954
Overlaps with miRBase pre-miRNAs: cin-mir-4006f
HuntMi prediction: true miRNA