miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGGAACATGTAAATAAGGGC

selected species: Ciona intestinalis

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343283-14443	TGGAACATGTAAATAAGGGCTG	TCCTTTGTTTCTATGTTTCACA	up	2	0

Secondary structure

TTTAGATTTGCAGTTTTTTTTCACGCGTCATTGGAACATGTAAATAAGGGCTGTTTATCGCATCCTTTGTTTCTATGTTTCACAGATTAGTGGATAGAGTCTTGCAAGTATA
------------------------------TTGGAACATGTAAATAAGGGCT 	1
------------------------------TTGGAACATGTAAATAAGGGC 	1
------------------------------TTGGAACATGTAAATAAGGG 	2
-------------------------------TGGAACATGTAAATAAGGGCTGT 	5
-------------------------------TGGAACATGTAAATAAGGGCTG 	10008
-------------------------------TGGAACATGTAAATAAGGGCT 	1736
-------------------------------TGGAACATGTAAATAAGGGC 	913
-------------------------------TGGAACATGTAAATAAGGG 	1772
--------------------------------GGAACATGTAAATAAGGGCTGT 	2
--------------------------------GGAACATGTAAATAAGGGCTG 	5
---------------------------------GAACATGTAAATAAGGGCTG 	1
----------------------------------AACATGTAAATAAGGGCTG 	1
--------------------------------------------------------------TCCTTTGTTTCTATGTTTCACA 	6
--------------------------------------------------------------TCCTTTGTTTCTATGTTTCAC 	22
--------------------------------------------------------------TCCTTTGTTTCTATGTTTCA 	1
--------------------------------------------------------------TCCTTTGTTTCTATGTTTC 	15

Overlaps with: MNEST024947 MNEST024948
Overlaps with miRBase pre-miRNAs: cin-mir-4006c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343284-14444	TGGAACATGTAAATAAGGGCTG	TCCTTTGTTTCTATGTTTCACA	up	2	0

Secondary structure

TTTAGATTTGCAGTTTTTTTTCACGCGTCATTGGAACATGTAAATAAGGGCTGTTTATCGCATCCTTTGTTTCTATGTTTCACAGATTAGTGGATAGAGTCTTGCAAGTATA
-------------------------------TGGAACATGTAAATAAGGGCTGT 	2
-------------------------------TGGAACATGTAAATAAGGGCTG 	2804
-------------------------------TGGAACATGTAAATAAGGGCT 	92
-------------------------------TGGAACATGTAAATAAGGGC 	247
-------------------------------TGGAACATGTAAATAAGGG 	511

Overlaps with: MNEST024947 MNEST024948
Overlaps with miRBase pre-miRNAs: cin-mir-4006c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343286	TGGAACATGTAAATAAGGGC	CTTTGTTTCTATGTTTCACA	up	2	0

Secondary structure

TTTAGATTTGCAGTTTTTTTTCACGCGTCATTGGAACATGTAAATAAGGGCTGTTTATCGCATCCTTTGTTTCTATGTTTCACAGATTAGTGGATAGAGTCTTGCAAGTATA
-------------------------------TGGAACATGTAAATAAGGGCTG 	1
-------------------------------TGGAACATGTAAATAAGGGCT 	7
-------------------------------TGGAACATGTAAATAAGGGC 	1011
-------------------------------TGGAACATGTAAATAAGGG 	12

Overlaps with: MNEST024947 MNEST024948
Overlaps with miRBase pre-miRNAs: cin-mir-4006c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Ciona intestinalis	GSM343285	TGGAACATGTAAATAAGGGCTG	TCCTTTGTTTCTATGTTTCACA	up	2	0

Secondary structure

TTTAGATTTGCAGTTTTTTTTCACGCGTCATTGGAACATGTAAATAAGGGCTGTTTATCGCATCCTTTGTTTCTATGTTTCACAGATTAGTGGATAGAGTCTTGCAAGTATA
-------------------------------TGGAACATGTAAATAAGGGCTG 	12
-------------------------------TGGAACATGTAAATAAGGG 	1

Overlaps with: MNEST024947 MNEST024948
Overlaps with miRBase pre-miRNAs: cin-mir-4006c
HuntMi prediction: true miRNA