miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAACATGTAAGTAAGGGC

selected species: Ciona intestinalis



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TGGAACATGTAAGTAAGGGCTG GTCGTTACCAACATGTTTTACA up 3 0


Secondary structure

GAAACAATCCATGGAACATGTAAGTAAGGGCTGCCCATGTGCAGTCGTTACCAACATGTTTTACAGATTGCTT
----------ATGGAACATGTAAGTAAGGGC 	1
-----------TGGAACATGTAAGTAAGGGCTGC 	508
-----------TGGAACATGTAAGTAAGGGCTG 	22509
-----------TGGAACATGTAAGTAAGGGCT 	5366
-----------TGGAACATGTAAGTAAGGGC 	2964
-----------TGGAACATGTAAGTAAGGG 	6048
------------GGAACATGTAAGTAAGGGCTGC 	3
------------GGAACATGTAAGTAAGGGCTG 	10
-------------GAACATGTAAGTAAGGGCTG 	1
--------------AACATGTAAGTAAGGGCTG 	1
-------------------------------------------GTCGTTACCAACATGTTTTAC 	7
-------------------------------------------GTCGTTACCAACATGTTTT 	3


Overlaps with: MNEST024941 MNEST024942
Overlaps with miRBase pre-miRNAs: cin-mir-4006a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343283-14443 TGGAACATGTAAGTAAGGGCTG GATTGCTTACGACTTTCAGG down 3 2


Secondary structure

ACATGTTTTACAGATTGCTTACGACTTTCAGGACTCTAAAATTAGACATATCCCTTAATCATTGGAACATGTAAGTAAGGGCTGTATTATTCT
----------------------------------------------------------TCATTGGAACATGTAAGTA 	1
------------------------------------------------------------ATTGGAACATGTAAGTAAGGG 	1
-------------------------------------------------------------TTGGAACATGTAAGTAAGGGCT 	15
-------------------------------------------------------------TTGGAACATGTAAGTAAGGGC 	16
-------------------------------------------------------------TTGGAACATGTAAGTAAGGG 	14
--------------------------------------------------------------TGGAACATGTAAGTAAGGGCTGT 	19
--------------------------------------------------------------TGGAACATGTAAGTAAGGGCTG 	22509
--------------------------------------------------------------TGGAACATGTAAGTAAGGGCT 	5366
--------------------------------------------------------------TGGAACATGTAAGTAAGGGC 	2964
--------------------------------------------------------------TGGAACATGTAAGTAAGGG 	6048
---------------------------------------------------------------GGAACATGTAAGTAAGGGCTGT 	1
---------------------------------------------------------------GGAACATGTAAGTAAGGGCTG 	10
----------------------------------------------------------------GAACATGTAAGTAAGGGCTG 	1
-----------------------------------------------------------------AACATGTAAGTAAGGGCTG 	1



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343283-14443 TGGAACATGTAAGTAAGGGCTG GTCATTATTTTCATGCTTCACA up 3 0


Secondary structure

CCTCAGGTATCATGTTATCATTGGAACATGTAAGTAAGGGCTGTCAAACAGTCATTATTTTCATGCTTCACAGAAAATATGAATATATAC
-----------------TCATTGGAACATGTAAGTA 	1
-------------------ATTGGAACATGTAAGTAAGGG 	1
--------------------TTGGAACATGTAAGTAAGGGCT 	15
--------------------TTGGAACATGTAAGTAAGGGC 	16
--------------------TTGGAACATGTAAGTAAGGG 	14
---------------------TGGAACATGTAAGTAAGGGCTGT 	19
---------------------TGGAACATGTAAGTAAGGGCTG 	22509
---------------------TGGAACATGTAAGTAAGGGCT 	5366
---------------------TGGAACATGTAAGTAAGGGC 	2964
---------------------TGGAACATGTAAGTAAGGG 	6048
----------------------GGAACATGTAAGTAAGGGCTGT 	1
----------------------GGAACATGTAAGTAAGGGCTG 	10
-----------------------GAACATGTAAGTAAGGGCTG 	1
------------------------AACATGTAAGTAAGGGCTG 	1
--------------------------------------------------GTCATTATTTTCATGCTTCAC 	9
--------------------------------------------------GTCATTATTTTCATGCTTC 	1


Overlaps with: MNEST024939 MNEST024940
Overlaps with miRBase pre-miRNAs: cin-mir-4006a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343284-14444 TGGAACATGTAAGTAAGGGCTG GATTGCTTACGACTTTCAGG down 3 2


Secondary structure

ACATGTTTTACAGATTGCTTACGACTTTCAGGACTCTAAAATTAGACATATCCCTTAATCATTGGAACATGTAAGTAAGGGCTGTATTATTCT
-------------------------------------------------------------TTGGAACATGTAAGTAAGGGCT 	2
-------------------------------------------------------------TTGGAACATGTAAGTAAGGGC 	3
-------------------------------------------------------------TTGGAACATGTAAGTAAGGG 	5
--------------------------------------------------------------TGGAACATGTAAGTAAGGGCTGT 	3
--------------------------------------------------------------TGGAACATGTAAGTAAGGGCTG 	6814
--------------------------------------------------------------TGGAACATGTAAGTAAGGGCT 	396
--------------------------------------------------------------TGGAACATGTAAGTAAGGGC 	854
--------------------------------------------------------------TGGAACATGTAAGTAAGGG 	1962
---------------------------------------------------------------GGAACATGTAAGTAAGGGCTGT 	2
---------------------------------------------------------------GGAACATGTAAGTAAGGGC 	1
----------------------------------------------------------------GAACATGTAAGTAAGGGCTG 	1



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343284-14444 TGGAACATGTAAGTAAGGGCTG GTCATTATTTTCATGCTTCACA up 3 0


Secondary structure

CCTCAGGTATCATGTTATCATTGGAACATGTAAGTAAGGGCTGTCAAACAGTCATTATTTTCATGCTTCACAGAAAATATGAATATATAC
--------------------TTGGAACATGTAAGTAAGGGCT 	2
--------------------TTGGAACATGTAAGTAAGGGC 	3
--------------------TTGGAACATGTAAGTAAGGG 	5
---------------------TGGAACATGTAAGTAAGGGCTGT 	3
---------------------TGGAACATGTAAGTAAGGGCTG 	6814
---------------------TGGAACATGTAAGTAAGGGCT 	396
---------------------TGGAACATGTAAGTAAGGGC 	854
---------------------TGGAACATGTAAGTAAGGG 	1962
----------------------GGAACATGTAAGTAAGGGCTGT 	2
----------------------GGAACATGTAAGTAAGGGC 	1
-----------------------GAACATGTAAGTAAGGGCTG 	1


Overlaps with: MNEST024939 MNEST024940
Overlaps with miRBase pre-miRNAs: cin-mir-4006a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Ciona intestinalis GSM343284-14444 TGGAACATGTAAGTAAGGGCTG GTCGTTACCAACATGTTTTACA up 3 0


Secondary structure

GAAACAATCCATGGAACATGTAAGTAAGGGCTGCCCATGTGCAGTCGTTACCAACATGTTTTACAGATTGCTT
----------ATGGAACATGTAAGTAAGGGC 	1
----------ATGGAACATGTAAGTAAGGG 	1
-----------TGGAACATGTAAGTAAGGGCTGC 	51
-----------TGGAACATGTAAGTAAGGGCTG 	6814
-----------TGGAACATGTAAGTAAGGGCT 	396
-----------TGGAACATGTAAGTAAGGGC 	854
-----------TGGAACATGTAAGTAAGGG 	1962
------------GGAACATGTAAGTAAGGGCTGC 	2
------------GGAACATGTAAGTAAGGGC 	1
-------------GAACATGTAAGTAAGGGCTG 	1


Overlaps with: MNEST024941 MNEST024942
Overlaps with miRBase pre-miRNAs: cin-mir-4006a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Ciona intestinalis GSM343286 TGGAACATGTAAGTAAGGGC CATTATTTTCATGCTTCACA up 3 0


Secondary structure

CCTCAGGTATCATGTTATCATTGGAACATGTAAGTAAGGGCTGTCAAACAGTCATTATTTTCATGCTTCACAGAAAATATGAATATATAC
--------------------TTGGAACATGTAAGTAAGGG 	5
---------------------TGGAACATGTAAGTAAGGGCTG 	4
---------------------TGGAACATGTAAGTAAGGGCT 	9
---------------------TGGAACATGTAAGTAAGGGC 	3051
---------------------TGGAACATGTAAGTAAGGG 	65
----------------------GGAACATGTAAGTAAGGGCT 	3
-----------------------GAACATGTAAGTAAGGGCTG 	1


Overlaps with: MNEST024939 MNEST024940
Overlaps with miRBase pre-miRNAs: cin-mir-4006a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Ciona intestinalis GSM343286 TGGAACATGTAAGTAAGGGC CGTTACCAACATGTTTTACA up 3 0


Secondary structure

GAAACAATCCATGGAACATGTAAGTAAGGGCTGCCCATGTGCAGTCGTTACCAACATGTTTTACAGATTGCTT
-----------TGGAACATGTAAGTAAGGGCTG 	4
-----------TGGAACATGTAAGTAAGGGCT 	9
-----------TGGAACATGTAAGTAAGGGC 	3051
-----------TGGAACATGTAAGTAAGGG 	65
------------GGAACATGTAAGTAAGGGCT 	3
-------------GAACATGTAAGTAAGGGCTG 	1
--------------AACATGTAAGTAAGGGCTGC 	1


Overlaps with: MNEST024941 MNEST024942
Overlaps with miRBase pre-miRNAs: cin-mir-4006a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Ciona intestinalis GSM343286 TGGAACATGTAAGTAAGGGC TTGCTTACGACTTTCAGG down 5 0


Secondary structure

ATGTTTTACAGATTGCTTACGACTTTCAGGACTCTAAAATTAGACATATCCCTTAATCATTGGAACATGTAAGTAAGGGCTGTATTATT
----------------------------------------TAGACATATCCCTTAATCAT 	1
-----------------------------------------------------------TTGGAACATGTAAGTAAGGG 	5
------------------------------------------------------------TGGAACATGTAAGTAAGGGCTG 	4
------------------------------------------------------------TGGAACATGTAAGTAAGGGCT 	9
------------------------------------------------------------TGGAACATGTAAGTAAGGGC 	3051
------------------------------------------------------------TGGAACATGTAAGTAAGGG 	65
-------------------------------------------------------------GGAACATGTAAGTAAGGGCT 	3
--------------------------------------------------------------GAACATGTAAGTAAGGGCTG 	1



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Ciona intestinalis GSM343285 TGGAACATGTAAGTAAGGGCTG GATTGCTTACGACTTTCAGG down 3 2


Secondary structure

ACATGTTTTACAGATTGCTTACGACTTTCAGGACTCTAAAATTAGACATATCCCTTAATCATTGGAACATGTAAGTAAGGGCTGTATTATTCT
--------------------------------------------------------------TGGAACATGTAAGTAAGGGCTG 	30
--------------------------------------------------------------TGGAACATGTAAGTAAGGGCT 	1
--------------------------------------------------------------TGGAACATGTAAGTAAGGGC 	9
--------------------------------------------------------------TGGAACATGTAAGTAAGGG 	6



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Ciona intestinalis GSM343285 TGGAACATGTAAGTAAGGGCTG GTCATTATTTTCATGCTTCACA up 3 0


Secondary structure

CCTCAGGTATCATGTTATCATTGGAACATGTAAGTAAGGGCTGTCAAACAGTCATTATTTTCATGCTTCACAGAAAATATGAATATATAC
---------------------TGGAACATGTAAGTAAGGGCTG 	30
---------------------TGGAACATGTAAGTAAGGGCT 	1
---------------------TGGAACATGTAAGTAAGGGC 	9
---------------------TGGAACATGTAAGTAAGGG 	6


Overlaps with: MNEST024939 MNEST024940
Overlaps with miRBase pre-miRNAs: cin-mir-4006a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Ciona intestinalis GSM343285 TGGAACATGTAAGTAAGGGCTG GTCGTTACCAACATGTTTTACA up 3 0


Secondary structure

GAAACAATCCATGGAACATGTAAGTAAGGGCTGCCCATGTGCAGTCGTTACCAACATGTTTTACAGATTGCTT
-----------TGGAACATGTAAGTAAGGGCTG 	30
-----------TGGAACATGTAAGTAAGGGCT 	1
-----------TGGAACATGTAAGTAAGGGC 	9
-----------TGGAACATGTAAGTAAGGG 	6


Overlaps with: MNEST024941 MNEST024942
Overlaps with miRBase pre-miRNAs: cin-mir-4006a-2
HuntMi prediction: true miRNA