miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAACATGTACGTAAGGGC

selected species: Ciona intestinalis



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TGGAACATGTACGTAAGGGCTG GCTATTACTTATATGTTGCATG up 3 0


Secondary structure

AATTTTCCACCGACGCAAAACTGGAACATGTACGTAAGGGCTGCGTTTCCAGCTATTACTTATATGTTGCATGTTTGCGCTGGTACTTTCT
--TTTTCCACCGACGCAAAAC 	2
--------------------CTGGAACATGTACGTAAGGGCTG 	2
--------------------CTGGAACATGTACGTAAGGGC 	3
--------------------CTGGAACATGTACGTAAGGG 	4
---------------------TGGAACATGTACGTAAGGGCTGC 	101
---------------------TGGAACATGTACGTAAGGGCTG 	6932
---------------------TGGAACATGTACGTAAGGGCT 	2689
---------------------TGGAACATGTACGTAAGGGC 	1464
---------------------TGGAACATGTACGTAAGGG 	2727
----------------------GGAACATGTACGTAAGGGCTG 	1
----------------------GGAACATGTACGTAAGGGC 	1
-----------------------GAACATGTACGTAAGGGCTGC 	1
-----------------------GAACATGTACGTAAGGGCTG 	1
------------------------AACATGTACGTAAGGGCTGC 	1
------------------------AACATGTACGTAAGGGCTG 	1
---------------------------------------------------GCTATTACTTATATGTTGC 	3


Overlaps with: MNEST024945 MNEST024946
Overlaps with miRBase pre-miRNAs: cin-mir-4006b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343284-14444 TGGAACATGTACGTAAGGGCTG GCTATTACTTATATGTTGCATG up 3 0


Secondary structure

AATTTTCCACCGACGCAAAACTGGAACATGTACGTAAGGGCTGCGTTTCCAGCTATTACTTATATGTTGCATGTTTGCGCTGGTACTTTCT
--------------------CTGGAACATGTACGTAAGGGC 	1
--------------------CTGGAACATGTACGTAAGGG 	2
---------------------TGGAACATGTACGTAAGGGCTGC 	6
---------------------TGGAACATGTACGTAAGGGCTG 	1735
---------------------TGGAACATGTACGTAAGGGCT 	240
---------------------TGGAACATGTACGTAAGGGC 	390
---------------------TGGAACATGTACGTAAGGG 	841
----------------------GGAACATGTACGTAAGGGCTG 	2


Overlaps with: MNEST024945 MNEST024946
Overlaps with miRBase pre-miRNAs: cin-mir-4006b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343286 TGGAACATGTACGTAAGGGC TATTACTTATATGTTGCATG up 3 0


Secondary structure

AATTTTCCACCGACGCAAAACTGGAACATGTACGTAAGGGCTGCGTTTCCAGCTATTACTTATATGTTGCATGTTTGCGCTGGTACTTTCT
-ATTTTCCACCGACGCAAAAC 	2
---------------------TGGAACATGTACGTAAGGGCT 	1
---------------------TGGAACATGTACGTAAGGGC 	1267
---------------------TGGAACATGTACGTAAGGG 	28


Overlaps with: MNEST024945 MNEST024946
Overlaps with miRBase pre-miRNAs: cin-mir-4006b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343285 TGGAACATGTACGTAAGGGCTG GCTATTACTTATATGTTGCATG up 3 0


Secondary structure

AATTTTCCACCGACGCAAAACTGGAACATGTACGTAAGGGCTGCGTTTCCAGCTATTACTTATATGTTGCATGTTTGCGCTGGTACTTTCT
---------------------TGGAACATGTACGTAAGGGCTG 	6
---------------------TGGAACATGTACGTAAGGGC 	2
---------------------TGGAACATGTACGTAAGGG 	2


Overlaps with: MNEST024945 MNEST024946
Overlaps with miRBase pre-miRNAs: cin-mir-4006b
HuntMi prediction: true miRNA