miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGGAACTTACTAATGAACAG

selected species: Ciona intestinalis

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343282-14442	TGGAACTTACTAATGAACAGG	TGTTGTAAGTAAGCTCCAAA	up	2	1

Secondary structure

TCAAAAATCGGTCGCACATCCTGACTATCTGCGTTACTGCATGGAACTTACTAATGAACAGGCTTGTGTACAGCTTAGCACTATTTTCGAATGTTGGTGCTAGCTCGTTGATATAAACAGCCTGTTGTAAGTAAGCTCCAAACAGTACGCGTGGGTTAACATCGAATGGAGTGCAGAAAA
-----------------------------------------TGGAACTTACTAATGAACAGGC 	28
-----------------------------------------TGGAACTTACTAATGAACAGG 	29
-----------------------------------------TGGAACTTACTAATGAACA 	1

Overlaps with: MNEST024912 MNEST024913
Overlaps with miRBase pre-miRNAs: cin-mir-4001f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343284-14444	TGGAACTTACTAATGAACAGGC	CTGTTGTAAGTAAGCTCCAAA	up	2	1

Secondary structure

TCAAAAATCGGTCGCACATCCTGACTATCTGCGTTACTGCATGGAACTTACTAATGAACAGGCTTGTGTACAGCTTAGCACTATTTTCGAATGTTGGTGCTAGCTCGTTGATATAAACAGCCTGTTGTAAGTAAGCTCCAAACAGTACGCGTGGGTTAACATCGAATGGAGTGCAGAAAA
---------------------TGACTATCTGCGTTACTGC 	1
-----------------------------------------TGGAACTTACTAATGAACAGGCT 	3830
-----------------------------------------TGGAACTTACTAATGAACAGGC 	8105
-----------------------------------------TGGAACTTACTAATGAACAGG 	1830
-----------------------------------------TGGAACTTACTAATGAACAG 	19
-----------------------------------------TGGAACTTACTAATGAACA 	29
------------------------------------------GGAACTTACTAATGAACAGGC 	2
-------------------------------------------------------------------------------------------TGTTGGTGCTAGCTCGTTG 	1
------------------------------------------------------------------------------------------------------------------------CCTGTTGTAAGTAAGCTCCAAAC 	23
------------------------------------------------------------------------------------------------------------------------CCTGTTGTAAGTAAGCTCCAAA 	86
------------------------------------------------------------------------------------------------------------------------CCTGTTGTAAGTAAGCTCCAA 	75
------------------------------------------------------------------------------------------------------------------------CCTGTTGTAAGTAAGCTCCA 	187
------------------------------------------------------------------------------------------------------------------------CCTGTTGTAAGTAAGCTCC 	307
-------------------------------------------------------------------------------------------------------------------------CTGTTGTAAGTAAGCTCCAAAC 	1
-------------------------------------------------------------------------------------------------------------------------CTGTTGTAAGTAAGCTCCA 	2
--------------------------------------------------------------------------------------------------------------------------------------------AACAGTACGCGTGGGTTAAC 	1

Overlaps with: MNEST024912 MNEST024913
Overlaps with miRBase pre-miRNAs: cin-mir-4001f
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343286	TGGAACTTACTAATGAACAG	GTTGTAAGTAAGCTCCAAA	up	2	1

Secondary structure

TCAAAAATCGGTCGCACATCCTGACTATCTGCGTTACTGCATGGAACTTACTAATGAACAGGCTTGTGTACAGCTTAGCACTATTTTCGAATGTTGGTGCTAGCTCGTTGATATAAACAGCCTGTTGTAAGTAAGCTCCAAACAGTACGCGTGGGTTAACATCGAATGGAGTGCAGAAAA
-----------------------------------------TGGAACTTACTAATGAACAGG 	1
-----------------------------------------TGGAACTTACTAATGAACAG 	1215
-----------------------------------------TGGAACTTACTAATGAACA 	31
--------------------------------------------AACTTACTAATGAACAGGCT 	1
------------------------------------------------------------------------------------------------------------------------CCTGTTGTAAGTAAGCTCCA 	120
------------------------------------------------------------------------------------------------------------------------CCTGTTGTAAGTAAGCTCC 	3
-------------------------------------------------------------------------------------------------------------------------CTGTTGTAAGTAAGCTCCAA 	2
---------------------------------------------------------------------------------------------------------------------------GTTGTAAGTAAGCTCCAAAC 	1

Overlaps with: MNEST024912 MNEST024913
Overlaps with miRBase pre-miRNAs: cin-mir-4001f
HuntMi prediction: true miRNA