miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGGAACTTATGCGAACGGGC

selected species: Ciona intestinalis

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343283-14443	TGGAACTTATGCGAACGGGCTG	GTCAATTCGTTTAAGCTCAAAC	up	5	0

Secondary structure

GGATCTACTGTTTCGCGTTTTTGGAACTTATGCGAACGGGCTGTTCCGTCAGTCAATTCGTTTAAGCTCAAACAACCGCAACGGACGTTTA
--------------------TTGGAACTTATGCGAACGGGCT 	1
---------------------TGGAACTTATGCGAACGGGCTGT 	9
---------------------TGGAACTTATGCGAACGGGCTG 	4959
---------------------TGGAACTTATGCGAACGGGCT 	2120
---------------------TGGAACTTATGCGAACGGGC 	859
---------------------TGGAACTTATGCGAACGGG 	1480
----------------------GGAACTTATGCGAACGGGCTG 	1
-----------------------GAACTTATGCGAACGGGCTG 	1
-----------------------------------ACGGGCTGTTCCGTCAGTC 	1
---------------------------------------------------GTCAATTCGTTTAAGCTCAAAC 	14
---------------------------------------------------GTCAATTCGTTTAAGCTCAAA 	7
---------------------------------------------------GTCAATTCGTTTAAGCTCAA 	14
---------------------------------------------------GTCAATTCGTTTAAGCTCA 	16

Overlaps with: MNEST024915 MNEST024916
Overlaps with miRBase pre-miRNAs: cin-mir-4001h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343284-14444	TGGAACTTATGCGAACGGGCTG	GTCAATTCGTTTAAGCTCAAAC	up	5	0

Secondary structure

GGATCTACTGTTTCGCGTTTTTGGAACTTATGCGAACGGGCTGTTCCGTCAGTCAATTCGTTTAAGCTCAAACAACCGCAACGGACGTTTA
---------------------TGGAACTTATGCGAACGGGCTGT 	2
---------------------TGGAACTTATGCGAACGGGCTG 	1894
---------------------TGGAACTTATGCGAACGGGCT 	233
---------------------TGGAACTTATGCGAACGGGC 	260
---------------------TGGAACTTATGCGAACGGG 	589
----------------------GGAACTTATGCGAACGGGCTG 	1

Overlaps with: MNEST024915 MNEST024916
Overlaps with miRBase pre-miRNAs: cin-mir-4001h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343286	TGGAACTTATGCGAACGGGC	CAATTCGTTTAAGCTCAAAC	up	5	0

Secondary structure

GGATCTACTGTTTCGCGTTTTTGGAACTTATGCGAACGGGCTGTTCCGTCAGTCAATTCGTTTAAGCTCAAACAACCGCAACGGACGTTTA
---------------------TGGAACTTATGCGAACGGGCT 	1
---------------------TGGAACTTATGCGAACGGGC 	472
---------------------TGGAACTTATGCGAACGGG 	9
-----------------------GAACTTATGCGAACGGGCTG 	1

Overlaps with: MNEST024915 MNEST024916
Overlaps with miRBase pre-miRNAs: cin-mir-4001h
HuntMi prediction: true miRNA