miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAAGACTAGTGATTTTGTTG

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TGGAAGACTAGTGATTTTGTTG ACAACAATCTATGGTCTCCTGC up 3 2


Secondary structure

TGCAACATATCCGCACCCGGTTGGAAGACTAGTGATTTTGTTGTTATAGCAACAACAATCTATGGTCTCCTGCACGGAAGTGGAAACTAAC
---------------------TGGAAGACTAGTGATTTTGTTGT 	9
---------------------TGGAAGACTAGTGATTTTGTTG 	9
----------------------------------------------------CAACAATCTATGGTCTCCTGCA 	1
----------------------------------------------------CAACAATCTATGGTCTCCTGC 	1

Overlaps with: MNEST024808
Overlaps with miRBase pre-miRNAs: cin-mir-7
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 TGGAAGACTAGTGATTTTGTTG ACAACAATCTATGGTCTCCTGC up 3 2


Secondary structure

TGCAACATATCCGCACCCGGTTGGAAGACTAGTGATTTTGTTGTTATAGCAACAACAATCTATGGTCTCCTGCACGGAAGTGGAAACTAAC
---------------------TGGAAGACTAGTGATTTTGTTG 	17
---------------------TGGAAGACTAGTGATTTTGTT 	3

Overlaps with: MNEST024808
Overlaps with miRBase pre-miRNAs: cin-mir-7
HuntMi prediction: true miRNA